Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g08f
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78540-2|CAB01737.1| 900|Caenorhabditis elegans Hypothetical pr... 100 6e-22
AF125962-1|AAD14741.1| 341|Caenorhabditis elegans Seven tm rece... 30 1.0
AC006644-5|AAF39834.1| 786|Caenorhabditis elegans Hypothetical ... 30 1.0
Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate carb... 29 2.4
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 29 3.2
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 28 4.2
Z77656-1|CAB01141.2| 350|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 28 4.2
AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical... 28 4.2
Z81458-6|CAB03826.2| 328|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z77656-6|CAB01142.2| 328|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81128-7|CAB03400.1| 898|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81040-3|CAB02783.3| 444|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z73423-4|CAH60746.1| 307|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z73423-3|CAA97775.2| 327|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF078785-8|AAC27095.1| 658|Caenorhabditis elegans Hypothetical ... 27 7.3
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 27 9.6
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 27 9.6
U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein. 27 9.6
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 27 9.6
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 27 9.6
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 27 9.6
AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormo... 27 9.6
>Z78540-2|CAB01737.1| 900|Caenorhabditis elegans Hypothetical
protein C33G3.4 protein.
Length = 900
Score = 100 bits (240), Expect = 6e-22
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 7/179 (3%)
Frame = +1
Query: 64 MNTCVLLQAFVFLFYVNNVTSVRLDLS-AAHWKLTNKNGSIAVRGSVPGGVYTDLNKAGI 240
M T +++ F LF ++ ++ A +W+ ++ N ++ G+VPG +Y+DL +GI
Sbjct: 1 MRTSLVVCLFWLLFQLHTTHGYNTLVNLAGNWEFSSSNKTVNGTGTVPGDIYSDLYASGI 60
Query: 241 IGDVLYGFNDVLSRWVAYDTWTYTGKFNVSAADLSTEAVNLVFDGIDTVAFVEINNTPVG 420
I + L+G N + +W+A D WTY+ KF + D T L + +DT+A V +N V
Sbjct: 61 IDNPLFGENHLNLKWIAEDDWTYSRKFRLIDLD-DTVGAFLEIESVDTIATVYVNGQKVL 119
Query: 421 STSSMFVRYVFNVKEQMQIGENVLKITFVSPIEAANIRSQK------HFAAPACVPDVY 579
+ + F+ Y NV + + +GEN + I F S ++ A R+ + H P C PD+Y
Sbjct: 120 HSRNQFLPYHVNVTDIIALGENDITIKFKSSVKYAEKRADEYKKIFGHSLPPDCNPDIY 178
>AF125962-1|AAD14741.1| 341|Caenorhabditis elegans Seven tm
receptor protein 113 protein.
Length = 341
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 445 ISRTYCSCYQLGYCLFPRTPLYQYH 371
IS TYC CY + + LF +Y+Y+
Sbjct: 93 ISSTYCGCYAMSFTLFAVHFVYRYY 117
>AC006644-5|AAF39834.1| 786|Caenorhabditis elegans Hypothetical
protein F55A3.2 protein.
Length = 786
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 573 IRDTGWCCEMFLRSDICSFNWRHKSNFQNIFAYLHLFLDIKHVSHEHTA 427
++DT + +FLRS C +W KSN A+ +F D SH+ A
Sbjct: 584 VKDTNYWLSIFLRS--CGIDWLCKSNNICSAAWSLVFRDSNKTSHQQYA 630
>Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical
protein D2023.2 protein.
Length = 1175
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -2
Query: 323 LNFPVYVHVSYATHLLSTSLKPYKTSPMIPALLRSVYTPPGTEPRTAIDPFLL 165
LN+ V V+ T L+T LKP SP IP Y P G +P T + L+
Sbjct: 496 LNYLGEVKVNGPTTPLATDLKPAVVSPPIP------YIPAGAKPPTGLRDVLV 542
>AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate
carboxylase protein.
Length = 1175
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -2
Query: 323 LNFPVYVHVSYATHLLSTSLKPYKTSPMIPALLRSVYTPPGTEPRTAIDPFLL 165
LN+ V V+ T L+T LKP SP IP Y P G +P T + L+
Sbjct: 496 LNYLGEVKVNGPTTPLATDLKPAVVSPPIP------YIPAGAKPPTGLRDVLV 542
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 296 IHGRILGSLTSAQQT*ARRQLTWCS 370
IH RI+G+L + AR+Q+TWC+
Sbjct: 113 IHRRIMGTLRGRLRQ-ARKQITWCA 136
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 350 SVLKSAALTLNFPVYVHVSYATHLLSTSLKP 258
S L L NF VY H+ + +LL TS P
Sbjct: 2036 SALSCGKLKFNFKVYTHLWFMGNLLPTSYNP 2066
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 350 SVLKSAALTLNFPVYVHVSYATHLLSTSLKP 258
S L L NF VY H+ + +LL TS P
Sbjct: 2036 SALSCGKLKFNFKVYTHLWFMGNLLPTSYNP 2066
>Z77656-1|CAB01141.2| 350|Caenorhabditis elegans Hypothetical
protein F07B10.2 protein.
Length = 350
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 445 ISRTYCSCYQLGYCLFPRTPLYQY 374
I TYC CY + + LF LY+Y
Sbjct: 93 IPTTYCWCYAMSFSLFALQFLYRY 116
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 350 SVLKSAALTLNFPVYVHVSYATHLLSTSLKP 258
S L L NF VY H+ + +LL TS P
Sbjct: 2036 SALSCGKLKFNFKVYTHLWFMGNLLPTSYNP 2066
>AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical
protein Y61A9LA.10 protein.
Length = 986
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 168 VGQFPMSST*I*PHRCNIIDVEQKDKSLQQNTRVHFHLFSGLLNVVYQQSMISIQN 1
VG +S+ P C + D E K ++L + R + FSGL V+Y + I I++
Sbjct: 230 VGDMRISNVTSLPDPCPLPD-EIKKRALNEKERKVYAPFSGLGGVIYDKDAIYIES 284
>Z81458-6|CAB03826.2| 328|Caenorhabditis elegans Hypothetical
protein F07B10.3 protein.
Length = 328
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 445 ISRTYCSCYQLGYCLFPRTPLYQY 374
+ TYC CY + + LF LY+Y
Sbjct: 93 VPTTYCWCYAMSFSLFALQFLYRY 116
>Z77656-6|CAB01142.2| 328|Caenorhabditis elegans Hypothetical
protein F07B10.3 protein.
Length = 328
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 445 ISRTYCSCYQLGYCLFPRTPLYQY 374
+ TYC CY + + LF LY+Y
Sbjct: 93 VPTTYCWCYAMSFSLFALQFLYRY 116
>Z81128-7|CAB03400.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.7 protein.
Length = 898
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 361 LVFDGIDTVAFVEINNTPVGSTSSMFVRYVFNVKE 465
LVFDGI TV E+ N + S + V V N KE
Sbjct: 133 LVFDGIHTVYSTELINVKEVNNSVINVAGVVNTKE 167
>Z81040-3|CAB02783.3| 444|Caenorhabditis elegans Hypothetical
protein C26E1.3 protein.
Length = 444
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = -2
Query: 401 ISTNATVSIPSNTKLTASVLKSAALTLNFPVYVHVSYATHLL-STSLKPYKTSPMIPALL 225
I + T+S+PS + +S A + NF ++ SY+ L + +K P
Sbjct: 51 IQNHHTMSVPSTSHPASSTPSLATASQNFSSHLPASYSADLFENIENNEHKAISGAPIFF 110
Query: 224 RSVYTPPGTEPRTAIDPFLLVN 159
S+ + +DP + N
Sbjct: 111 NSITAVLKNLAKAGVDPIVAEN 132
>Z73423-4|CAH60746.1| 307|Caenorhabditis elegans Hypothetical
protein C03A3.1b protein.
Length = 307
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 335 AALTLNFPVYVHVSYATHLLSTSLKP 258
A LTL++ + +H+++ H+LS LKP
Sbjct: 170 AGLTLSYAI-IHIAFPQHVLSLILKP 194
>Z73423-3|CAA97775.2| 327|Caenorhabditis elegans Hypothetical
protein C03A3.1a protein.
Length = 327
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 335 AALTLNFPVYVHVSYATHLLSTSLKP 258
A LTL++ + +H+++ H+LS LKP
Sbjct: 190 AGLTLSYAI-IHIAFPQHVLSLILKP 214
>AF078785-8|AAC27095.1| 658|Caenorhabditis elegans Hypothetical
protein C04E12.10 protein.
Length = 658
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 76 VLLQAFVFLFYVNNVTSVRLDLSAAHWKLTNKNGSIAVRGSVPGGVYTDLNKAGIIGDVL 255
++L + F++ S R D + +W T+K GS +V+ S + T L K GD++
Sbjct: 72 MILNPNIKTFFIGIKMSKREDFTDTYWFDTSKMGSFSVKVSSKKRLVTHLYKE--TGDII 129
Query: 256 Y 258
+
Sbjct: 130 H 130
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 487 VLKITFVSPIEAANIRSQKHFAAPACVPDVY 579
V ++ VSPIE++N +KH A +P +
Sbjct: 278 VTRVVHVSPIESSNATMRKHGHHEATIPKTF 308
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 487 VLKITFVSPIEAANIRSQKHFAAPACVPDVY 579
V ++ VSPIE++N +KH A +P +
Sbjct: 278 VTRVVHVSPIESSNATMRKHGHHEATIPKTF 308
>U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein.
Length = 359
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 368 NTKLTASVLK-SAALTLNFPVYVHVSYATHLLSTSLKPYKTSPMIPALL 225
N ++T+ V + +AA N P H++ TH + K ++ P + +LL
Sbjct: 200 NFEMTSQVKELTAAFVANMPCSTHLTSGTHAIGAIKKFIESVPALSSLL 248
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 368 NTKLTASVLK-SAALTLNFPVYVHVSYATHLLSTSLKPYKTSPMIPALL 225
N ++T+ V + +AA N P H++ TH + K ++ P + +LL
Sbjct: 315 NFEMTSQVKELTAAFVANMPCSTHLTSGTHAIGAIKKFIESVPALSSLL 363
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 368 NTKLTASVLK-SAALTLNFPVYVHVSYATHLLSTSLKPYKTSPMIPALL 225
N ++T+ V + +AA N P H++ TH + K ++ P + +LL
Sbjct: 311 NFEMTSQVKELTAAFVANMPCSTHLTSGTHAIGAIKKFIESVPALSSLL 359
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 487 VLKITFVSPIEAANIRSQKHFAAPACVPDVY 579
V ++ VSPIE++N +KH A +P +
Sbjct: 278 VTRVVHVSPIESSNATMRKHGHHEATIPKTF 308
>AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 2 protein.
Length = 359
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 368 NTKLTASVLK-SAALTLNFPVYVHVSYATHLLSTSLKPYKTSPMIPALL 225
N ++T+ V + +AA N P H++ TH + K ++ P + +LL
Sbjct: 200 NFEMTSQVKELTAAFVANMPCSTHLTSGTHAIGAIKKFIESVPALSSLL 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,970,499
Number of Sequences: 27780
Number of extensions: 304262
Number of successful extensions: 907
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -