Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g07r
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    27   7.1  
AF078792-1|AAC26947.2|  352|Caenorhabditis elegans Serpentine re...    26   9.4  

>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK418.11 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 84  ADVANFLRKKAFFSLNIIFGIVRIFY 7
           AD AN + K +FF+L+I+F   R ++
Sbjct: 135 ADEANLILKHSFFTLSIVFMAGRSYF 160


>AF078792-1|AAC26947.2|  352|Caenorhabditis elegans Serpentine
           receptor, class h protein40 protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 89  EVLPIPKETGS*KN--CHKSPCVKSHNIARKSIQLLSDH*CCYQLNLYVLFFSVRFFLEP 262
           EVL +P +  + K     K PC+ S+ +  ++  +  D    +  ++Y+  F V  F+  
Sbjct: 166 EVLTLPSDQDAAKLQVLQKYPCLPSYFLDDRAFLIQIDGRTMFNPHMYITCFIVACFIIF 225

Query: 263 NFLEPHWHPIKSLNLERNTA 322
                 WH +   N   +T+
Sbjct: 226 YMSNSFWHLLPKNNPTMSTS 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,318,276
Number of Sequences: 27780
Number of extensions: 138474
Number of successful extensions: 288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)