Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g07f
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)                   27   5.6  
SB_54564| Best HMM Match : 7tm_1 (HMM E-Value=0.54)                    27   7.5  

>SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)
          Length = 483

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 448 YVICFKI*NITINVEDTYYTKYNVKTEKGFFTQK 347
           YVI F   NITI V D Y   Y  +    FF+ K
Sbjct: 70  YVISFLTTNITIRVVDVYDFLYGKRPRFTFFSPK 103


>SB_54564| Best HMM Match : 7tm_1 (HMM E-Value=0.54)
          Length = 191

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 415 INVEDTYYTKYNVKTEKGFFTQK 347
           +NVE T +TKY  +TE  F  Q+
Sbjct: 123 MNVERTVFTKYEERTETSFSRQR 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,713
Number of Sequences: 59808
Number of extensions: 194070
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)