Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g07f
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81500-8|CAM84816.1|  284|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    27   8.7  

>Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical
           protein T26H2.6 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 284 QFF*LPVSLGIGSTSEADVANFLRKKAFFSLNIIFGIVRIFYVYCDVLNFKANY 445
           Q + + V   + +     V N+L      +LN +FG + I  +YC V  +K  +
Sbjct: 183 QVYYVAVEYFVRNEKNERVLNYLSIGTALTLNSVFGAMVIVIIYCGVKTYKVTH 236


>Z81500-8|CAM84816.1|  284|Caenorhabditis elegans Hypothetical
           protein F11D11.14 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 314 IGSTSEADVANFLRKKAFFSLNIIFGIVRIFYVYCDVLNFK 436
           I ST   + A     + +++ N I  +VRIF   C+V NF+
Sbjct: 33  ISSTLNVETAEECITRCYYNSNCI--LVRIFQTSCEVFNFQ 71


>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK418.11 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 332 ADVANFLRKKAFFSLNIIFGIVRIFY 409
           AD AN + K +FF+L+I+F   R ++
Sbjct: 135 ADEANLILKHSFFTLSIVFMAGRSYF 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,105,464
Number of Sequences: 27780
Number of extensions: 155518
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)