Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g06f
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 30 0.33
01_03_0108 - 12628711-12629178 29 1.0
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836... 27 2.3
04_03_0314 - 14238620-14240128 27 2.3
02_05_0979 + 33268294-33269595 27 2.3
12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151... 27 3.1
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948 27 3.1
06_01_0471 - 3341839-3341881,3341987-3342080,3344724-3344914,334... 27 4.1
05_01_0476 - 3896314-3898725 26 5.4
05_01_0438 + 3475017-3475484 26 5.4
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 26 5.4
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 26 7.2
06_01_0351 + 2537022-2538281 26 7.2
07_03_1447 + 26587436-26587497,26588479-26589130,26589247-265893... 25 9.5
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 25 9.5
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 25 9.5
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 111 LWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT 212
LW EHF L G + PHR + IG DS+ T
Sbjct: 67 LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100
>01_03_0108 - 12628711-12629178
Length = 155
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 273 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSCH 142
KHK+V ++++ K+ T LR+ P A CG GTF++ H
Sbjct: 94 KHKKVKLAVLQFYKVD-DATGKVTRLRKECPNAECGAGTFMANH 136
>07_01_0991 -
8358309-8358338,8359115-8359393,8359964-8360092,
8360317-8360598,8361400-8361525,8363490-8363870
Length = 408
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 129 NVPTATTAIAPSAKALAADVL 67
++PT TTA +P+ KAL D+L
Sbjct: 25 HLPTTTTAASPALKALGEDLL 45
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 144 HQVKRNVPTATTAIAPSAKALAADV 70
H + N+ T A+ P+A+ALAAD+
Sbjct: 145 HPLSPNLSTLAVALTPAAEALAADL 169
>02_05_0979 + 33268294-33269595
Length = 433
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -2
Query: 169 RWGNLPFLPPSKEKCSDRHNRHRA*C*SISSGCVAALRIRILGHRKMAIYLWQRKT 2
+W +L PP +E + RH H S C + ++I GH YLW T
Sbjct: 94 QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLWNPST 147
>12_02_0037 -
12613686-12614318,12614792-12614878,12614985-12615176,
12617246-12617371,12617479-12617565,12617994-12618458,
12618868-12618947,12619739-12619751
Length = 560
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 230 YFSAALCSATIFADSRLELRAVGEPSFL 147
YF A LC T+ +S + + AV P FL
Sbjct: 404 YFVATLCMCTLLVESMMMIIAVIVPDFL 431
>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
Length = 712
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 178 SSVRWGNLPFLPPSKEKCSDRHNRHRA 98
S +RW FLPPS + SD H + RA
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRA 524
>06_01_0471 -
3341839-3341881,3341987-3342080,3344724-3344914,
3345025-3345248
Length = 183
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 85 CFSTRRDGGCGG 120
C RRDGGCGG
Sbjct: 87 CLHRRRDGGCGG 98
>05_01_0476 - 3896314-3898725
Length = 803
Score = 26.2 bits (55), Expect = 5.4
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = -3
Query: 309 FFLIYNIILLDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSCHQVKR 130
F ++ +ILL + K +H S ++ + FR + C+ + F+ GGG F S V +
Sbjct: 473 FLVMLMLILLILRKKCLHTSQLVGGIVAFRYSDLCHGTKNFS--EKLGGGGFGS---VSK 527
Query: 129 NVPTATTAIA 100
V + +T IA
Sbjct: 528 GVLSDSTIIA 537
>05_01_0438 + 3475017-3475484
Length = 155
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 273 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSCH 142
KHK+V ++++ K+ T LR+ P CG GTF++ H
Sbjct: 94 KHKKVKLAVLQFYKVD-DATGKVTRLRKECPNNDCGAGTFMANH 136
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 208 LLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHN 110
L SSP+ + S + G LPFL P KC + N
Sbjct: 108 LYTSSPMNSGSCRKTGYLPFL-PQPPKCEQQQN 139
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 126 VPTATTAIAPSAKALAA 76
VPTATTA AP+A AA
Sbjct: 123 VPTATTASAPAAAVTAA 139
>06_01_0351 + 2537022-2538281
Length = 419
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 205 LLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHRA-*C*SISSGCVAALRI-RILGH 38
L++S R L RW NLP + PS R R +SSGC +++ ++GH
Sbjct: 282 LVASNDRLLMVRRWINLPPIYPSDSGIVKRTRRFEVFEAADLSSGCGRWIKVDTLMGH 339
>07_03_1447 +
26587436-26587497,26588479-26589130,26589247-26589335,
26589794-26589858,26589967-26590022,26590107-26590227,
26590316-26590390,26590689-26590742,26590830-26590924,
26591004-26591178,26591293-26591537
Length = 562
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 106 GGCGGRNISLYLVARKEGSPTARSSRRESAKIVAEHSAAEK*FCSQNNTYV 258
GG L+ +A+ G P R +SA + A AA C++ ++V
Sbjct: 455 GGASSNERILHSIAQIFGCPVFTVQRPDSASLGAALRAAHGWLCNEEGSFV 505
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 88 FSTRRDGGCGGRNISLYLVARKEGSPTARSSRRESAKIVAEHSA 219
F R DGG N+ + + A GSP R + E+ + A ++A
Sbjct: 431 FLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAA 474
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 186 AP*APCGGGTFLSCHQVKRNVPTATTAIAPSAKALA 79
AP PC + KR+ ATT +AP A A
Sbjct: 424 APQQPCSDAVRCNDDGEKRSAEVATTEVAPDGSASA 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,842,294
Number of Sequences: 37544
Number of extensions: 168879
Number of successful extensions: 467
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -