Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g06f
(311 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U54559-1|AAD03465.1| 352|Homo sapiens translation initiation fa... 29 2.9
CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein. 29 2.9
BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation ... 29 2.9
BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein. 29 2.9
BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation ... 29 2.9
AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation ... 29 2.9
AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation ... 29 2.9
U80735-1|AAB91434.1| 744|Homo sapiens CAGF28 protein. 29 3.8
BX538201-1|CAD98066.1| 675|Homo sapiens hypothetical protein pr... 29 3.8
BC033781-1|AAH33781.1| 757|Homo sapiens PAXIP1 protein protein. 29 3.8
BC008328-1|AAH08328.1| 391|Homo sapiens PAXIP1 protein protein. 29 3.8
AK123600-1|BAC85657.1| 1035|Homo sapiens mRNA. protein. 29 3.8
AC093726-1|AAP21865.1| 698|Homo sapiens unknown protein. 29 3.8
U37028-1|AAB38547.1| 1162|Homo sapiens leukointegrin alpha d cha... 28 6.7
BC038237-1|AAH38237.1| 1169|Homo sapiens ITGAX protein protein. 28 6.7
AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation ... 28 6.7
AB208945-1|BAD92182.1| 1177|Homo sapiens PREDICTED: integrin, al... 28 6.7
M81695-1|AAA59180.1| 1163|Homo sapiens eukocyte adhesion glycopr... 27 8.8
AB040955-1|BAA96046.1| 1044|Homo sapiens KIAA1522 protein protein. 27 8.8
>U54559-1|AAD03465.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 182 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 12
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein.
Length = 352
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 182 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 12
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 182 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 12
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein.
Length = 349
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 182 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 12
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 283 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 341
>BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 182 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 12
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 182 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 12
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 182 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 12
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>U80735-1|AAB91434.1| 744|Homo sapiens CAGF28 protein.
Length = 744
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 282 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 148
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 635 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 679
>BX538201-1|CAD98066.1| 675|Homo sapiens hypothetical protein
protein.
Length = 675
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 282 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 148
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 566 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 610
>BC033781-1|AAH33781.1| 757|Homo sapiens PAXIP1 protein protein.
Length = 757
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 282 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 148
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 648 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 692
>BC008328-1|AAH08328.1| 391|Homo sapiens PAXIP1 protein protein.
Length = 391
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 282 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 148
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 282 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 326
>AK123600-1|BAC85657.1| 1035|Homo sapiens mRNA. protein.
Length = 1035
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 282 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 148
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 926 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 970
>AC093726-1|AAP21865.1| 698|Homo sapiens unknown protein.
Length = 698
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 282 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 148
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 589 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 633
>U37028-1|AAB38547.1| 1162|Homo sapiens leukointegrin alpha d chain
protein.
Length = 1162
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 233 NYFSAALCSATIFADSRLELRAVGEPSF 150
+YF A+LCS + +D +L +G P +
Sbjct: 455 SYFGASLCSVDVDSDGSTDLILIGAPHY 482
>BC038237-1|AAH38237.1| 1169|Homo sapiens ITGAX protein protein.
Length = 1169
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 233 NYFSAALCSATIFADSRLELRAVGEPSF 150
+YF A+LCS + +D +L +G P +
Sbjct: 456 SYFGASLCSVDVDSDGSTDLVLIGAPHY 483
>AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 182 LELRAVGEPSFLATK*REMFRPPQPPSRL 96
++ ++ GEP ++F+PPQPP+R+
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARM 314
>AB208945-1|BAD92182.1| 1177|Homo sapiens PREDICTED: integrin, alpha
D variant protein.
Length = 1177
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 233 NYFSAALCSATIFADSRLELRAVGEPSF 150
+YF A+LCS + +D +L +G P +
Sbjct: 471 SYFGASLCSVDVDSDGSTDLILIGAPHY 498
>M81695-1|AAA59180.1| 1163|Homo sapiens eukocyte adhesion
glycoprotein precursor protein.
Length = 1163
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 233 NYFSAALCSATIFADSRLELRAVGEPSF 150
+YF A+LCS + D +L +G P +
Sbjct: 456 SYFGASLCSVDVDTDGSTDLVLIGAPHY 483
>AB040955-1|BAA96046.1| 1044|Homo sapiens KIAA1522 protein protein.
Length = 1044
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 206 ATIFADSRLELRAVGEPSFLATK*REMFRPPQPPSRLVLKH*QRMCCCP 60
+T A L +R+ G+ S + R++ RPP PP R H QR P
Sbjct: 418 STAEASDTLSIRSSGQLSGRSVSLRKLKRPPPPPRRTHSLH-QRGLAVP 465
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,738,755
Number of Sequences: 237096
Number of extensions: 842320
Number of successful extensions: 1579
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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