Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g04r
         (481 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   1.9  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   1.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   7.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.8  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 320 GVLKPRPTSLWYLNGFLLRFTPIPFLRF 403
           G L P+PTS+  ++  LL+F P   ++F
Sbjct: 69  GALWPQPTSVTKISSTLLKF-PYRSIKF 95


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 170 PNTIGSRNGTGTCPYICRLASGTWRLVI 87
           PN I   NGTG      RLA+G   LV+
Sbjct: 161 PNNIILGNGTGVQLVPTRLANGDIALVL 188


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 107  GTWRLVIL*RSANADLCPKQLDSM 36
            GT+  +I     + DLC K +D M
Sbjct: 1308 GTFSQIITKTQLDFDLCSKPIDEM 1331


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 107  GTWRLVIL*RSANADLCPKQLDSM 36
            GT+  +I     + DLC K +D M
Sbjct: 1308 GTFSQIITKTQLDFDLCSKPIDEM 1331


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 344 SLWYLNGFLLRFTPIPFLR 400
           SL +   ++ R +PIPF++
Sbjct: 264 SLGWWENYISRHSPIPFIK 282


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 344 SLWYLNGFLLRFTPIPFLR 400
           SL +   ++ R +PIPF++
Sbjct: 264 SLGWWENYISRHSPIPFIK 282


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 344 SLWYLNGFLLRFTPIPFLR 400
           SL +   ++ R +PIPF++
Sbjct: 264 SLGWWENYISRHSPIPFIK 282


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 344 SLWYLNGFLLRFTPIPFLR 400
           SL +   ++ R +PIPF++
Sbjct: 264 SLGWWENYISRHSPIPFIK 282


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 113 QGDKCTDMFLCRFSNL 160
           +GD C D+  C  S L
Sbjct: 55  EGDNCRDVIQCTSSGL 70


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 366 KPLRYHKDVGLGFKTPR 316
           +P + HK   + FK PR
Sbjct: 293 QPSQVHKQTAICFKAPR 309


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 112 ARRQMYGHVPVPFLEP 159
           A R    H PVP+L P
Sbjct: 156 ASRHHVDHQPVPYLTP 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,631
Number of Sequences: 336
Number of extensions: 2344
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)