Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g04r
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   198   3e-52
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   198   3e-52
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    32   0.039
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   2.6  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.8  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.8  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  198 bits (484), Expect = 3e-52
 Identities = 90/143 (62%), Positives = 114/143 (79%)
 Frame = -2

Query: 465 LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 286
           +++++  Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53

Query: 285 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 106
           KCPF G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 54  KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113

Query: 105 DVEIGDIVTIGECRPLSKTVRFN 37
            +  GD+VT+G+CRPLSKTVRFN
Sbjct: 114 -INEGDVVTVGQCRPLSKTVRFN 135


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  198 bits (484), Expect = 3e-52
 Identities = 90/143 (62%), Positives = 114/143 (79%)
 Frame = -2

Query: 465 LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 286
           +++++  Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53

Query: 285 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 106
           KCPF G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 54  KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113

Query: 105 DVEIGDIVTIGECRPLSKTVRFN 37
            +  GD+VT+G+CRPLSKTVRFN
Sbjct: 114 -INEGDVVTVGQCRPLSKTVRFN 135


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 32.3 bits (70), Expect = 0.039
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 237 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 58
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 57  SKTVRF 40
           S T RF
Sbjct: 64  SATKRF 69


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 326 LKPRPTSLWYLNGFLLRFTP 385
           L P+PT+ W  NGF  + TP
Sbjct: 187 LPPKPTTPWRRNGFRSKTTP 206


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 384 GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 286
           G+K + +P  Y   VGLG K  +  I  T +D+
Sbjct: 515 GIKEAIQPTMYLPGVGLGNKGSKIQINMTPVDR 547


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 380 TPIPFLRFRKTVGCFWNER 436
           T   F++ R TV CFW E+
Sbjct: 290 TVFSFVQVRGTVPCFWEEQ 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,310
Number of Sequences: 5004
Number of extensions: 36983
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)