Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g04r
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 185 1e-47
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 185 1e-47
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 184 3e-47
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 175 1e-44
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 173 6e-44
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 137 4e-33
08_02_0383 - 16539472-16539633,16543044-16543205 44 9e-05
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 37 0.010
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 2.6
11_06_0289 - 21969248-21973516 28 4.5
11_06_0185 + 21018045-21022307 28 4.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 7.9
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 185 bits (451), Expect = 1e-47
Identities = 92/149 (61%), Positives = 110/149 (73%), Gaps = 10/149 (6%)
Frame = -2
Query: 453 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 277
MA+QTE++F KQP VFL+ KK G G K + R+ K +GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 124
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 123 LSPCFRDVEIGDIVTIGECRPLSKTVRFN 37
+SPCFR V+ GD V IG+CRPLSKTVRFN
Sbjct: 121 VSPCFR-VKEGDHVIIGQCRPLSKTVRFN 148
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 185 bits (451), Expect = 1e-47
Identities = 92/149 (61%), Positives = 110/149 (73%), Gaps = 10/149 (6%)
Frame = -2
Query: 453 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 277
MA+QTE++F KQP VFL+ KK G G K + R+ K +GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 124
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 123 LSPCFRDVEIGDIVTIGECRPLSKTVRFN 37
+SPCFR V+ GD V IG+CRPLSKTVRFN
Sbjct: 121 VSPCFR-VKEGDHVIIGQCRPLSKTVRFN 148
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 184 bits (449), Expect = 3e-47
Identities = 92/147 (62%), Positives = 109/147 (74%), Gaps = 8/147 (5%)
Frame = -2
Query: 453 MADQTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 277
MA+QTER+F KQP VFL KK G K + R+ K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-------FEKRHRNMSVHLS 118
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R +EKRH N+ H+S
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHIS 120
Query: 117 PCFRDVEIGDIVTIGECRPLSKTVRFN 37
PCFR V+ GD V IG+CRPLSKTVRFN
Sbjct: 121 PCFR-VKEGDHVIIGQCRPLSKTVRFN 146
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 175 bits (427), Expect = 1e-44
Identities = 80/124 (64%), Positives = 96/124 (77%)
Frame = -2
Query: 408 FLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVV 229
F +K G G K + R+ K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G
Sbjct: 8 FSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTC 67
Query: 228 QKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKT 49
KM RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKT
Sbjct: 68 HSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKT 126
Query: 48 VRFN 37
VRFN
Sbjct: 127 VRFN 130
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 173 bits (421), Expect = 6e-44
Identities = 92/164 (56%), Positives = 110/164 (67%), Gaps = 25/164 (15%)
Frame = -2
Query: 453 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 277
MA+QTE++F KQP VFL+ KK G G K + R+ K +GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN--------------------- 160
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISD 120
Query: 159 ---RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 37
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN
Sbjct: 121 LGCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFN 163
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 137 bits (332), Expect = 4e-33
Identities = 64/100 (64%), Positives = 77/100 (77%), Gaps = 1/100 (1%)
Frame = -2
Query: 453 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 277
MA+QTE++F KQP VFL+ KK G G K + R+ K +GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 157
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 43.6 bits (98), Expect = 9e-05
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = -2
Query: 243 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 64
+ G+V KMQ+++V+ D L + YNR+ KR H D IGD V + R
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSR 61
Query: 63 PLSK 52
PLSK
Sbjct: 62 PLSK 65
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = -2
Query: 243 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 64
LTG V K +T+ + L PKY R E+ + H P ++GD+V + R
Sbjct: 972 LTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSR 1029
Query: 63 PLSKTVRF 40
P+SKT F
Sbjct: 1030 PISKTKHF 1037
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 309 IEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 163
+ GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 231 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 97
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1251 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1295
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 231 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 97
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1249 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1293
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 54 WTKVCIRRSLQYHQSPRP*SKATNVRTCSCAVSRTY 161
W C RR Y +SP P + R+ S + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,883,770
Number of Sequences: 37544
Number of extensions: 259114
Number of successful extensions: 613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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