Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g04r
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   201   2e-52
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           196   6e-51
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           191   2e-49
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    38   0.005
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.008
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...    31   0.40 
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    30   0.93 
At5g17670.1 68418.m02071 expressed protein                             27   5.0  
At4g26980.1 68417.m03882 expressed protein                             27   5.0  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   5.0  
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00...    27   6.5  
At5g60150.1 68418.m07540 expressed protein ; expression supporte...    27   8.7  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   8.7  
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi...    27   8.7  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  201 bits (491), Expect = 2e-52
 Identities = 94/140 (67%), Positives = 114/140 (81%), Gaps = 1/140 (0%)
 Frame = -2

Query: 453 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 277
           MA+QTE++F KQP VFL+ KK G G +  +   R+ K++GLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 97
           FTG VSIRGRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VK 119

Query: 96  IGDIVTIGECRPLSKTVRFN 37
            GD VTIG+CRPLSKTVRFN
Sbjct: 120 EGDRVTIGQCRPLSKTVRFN 139


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  196 bits (478), Expect = 6e-51
 Identities = 90/140 (64%), Positives = 111/140 (79%), Gaps = 1/140 (0%)
 Frame = -2

Query: 453 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 277
           MA+QTE++F KQP VFL+ KK G G +  +   R+ K++GLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 97
           FTG VSIRGRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 96  IGDIVTIGECRPLSKTVRFN 37
            GD + IG+CRPLSKTVRFN
Sbjct: 120 EGDHIIIGQCRPLSKTVRFN 139


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  191 bits (465), Expect = 2e-49
 Identities = 89/140 (63%), Positives = 109/140 (77%), Gaps = 1/140 (0%)
 Frame = -2

Query: 453 MADQTERSFQKQPTVFLNRK-KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 277
           MA+QTE++F KQP VFL+ K  G G +  +   R+ K++GLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 97
           FTG VSIRGRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 96  IGDIVTIGECRPLSKTVRFN 37
            GD V IG+CRPLSKTVRFN
Sbjct: 120 EGDHVIIGQCRPLSKTVRFN 139


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 237 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 61
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 60  LSK 52
           LSK
Sbjct: 63  LSK 65


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = -2

Query: 249 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 70
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 69  CRPLSK 52
            RPLSK
Sbjct: 60  SRPLSK 65


>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -2

Query: 363 PLRYHKDVGL---GFKTP-REAIEGTYIDKKCP 277
           P++YHKD      G KT  R AIE   ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = -2

Query: 249 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 70
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 69  CRPLSKTVRF 40
            RP+SKT  F
Sbjct: 109 SRPISKTKSF 118


>At5g17670.1 68418.m02071 expressed protein
          Length = 309

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 317 RGVLKPRPTSLWYLN 361
           RG L+PRP   WYLN
Sbjct: 86  RGTLRPRPVLDWYLN 100


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 327 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 223
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 252 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 136
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


>At4g02740.1 68417.m00374 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 645

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 345 DVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL--TGVVQKMKMQRT 205
           D+G+GF      ++G  +D     +G+ S+R R++  TG +  + ++ T
Sbjct: 364 DMGMGFDVDYLLVQGQVLDSASKASGDDSVRDRLIDRTGKLAFLLLEST 412


>At5g60150.1 68418.m07540 expressed protein ; expression supported
           by MPSS
          Length = 1195

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 427 PKTTYSLSEPQERYWCEAEQKTVEIPQGC 341
           P +  S SE Q++Y C + + T ++  GC
Sbjct: 833 PFSEKSTSEKQKQYNCSSSENTSDVNDGC 861


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
            protein [Arabidopsis thaliana] GI:21743571; contains Pfam
            profile PF00730: HhH-GPD superfamily base excision DNA
            repair protein
          Length = 1729

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 229  SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALLQG 104
            S+ EDA    DP  +P++   I+    T +EH+   + L +G
Sbjct: 1470 SDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEG 1511


>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
           protein similar to RNA binding protein PufA GB:AAD39751
           [Dictyostelium discoideum] and similar to Pumilio
           protein GB:A46221 [Drosophila sp.]
          Length = 1003

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 268 ASEGTLLVNVG---TLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKD 411
           ++EG+ L   G   +LNRL   + +E H  V+   +S  LHT +  A   D
Sbjct: 495 SAEGSHLTGDGDRQSLNRLINQVASELHSPVMDPHYSQYLHTASSTAAPID 545


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,260,930
Number of Sequences: 28952
Number of extensions: 204417
Number of successful extensions: 505
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)