Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g04f
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   204   6e-54
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   204   6e-54
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    38   0.001
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   2.9  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.7  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.9  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  204 bits (498), Expect = 6e-54
 Identities = 93/147 (63%), Positives = 118/147 (80%)
 Frame = +2

Query: 17  LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 196
           +++++  Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53

Query: 197 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 376
           KCPF G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 54  KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113

Query: 377 DVEIGDIVTIGECRPLSKTVRFNVLKV 457
            +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 114 -INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  204 bits (498), Expect = 6e-54
 Identities = 93/147 (63%), Positives = 118/147 (80%)
 Frame = +2

Query: 17  LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 196
           +++++  Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53

Query: 197 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 376
           KCPF G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 54  KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113

Query: 377 DVEIGDIVTIGECRPLSKTVRFNVLKV 457
            +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 114 -INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +2

Query: 245 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 424
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 425 SKTVRFNVLKV 457
           S T RF ++K+
Sbjct: 64  SATKRFEIIKI 74


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 156 LKPRPTSLWYLNGFLLRFTP 97
           L P+PT+ W  NGF  + TP
Sbjct: 187 LPPKPTTPWRRNGFRSKTTP 206


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 380 VEIGDIVTIGECRPLSKTVRFNVL 451
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 98  GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 196
           G+K + +P  Y   VGLG K  +  I  T +D+
Sbjct: 515 GIKEAIQPTMYLPGVGLGNKGSKIQINMTPVDR 547


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 102 TPIPFLRFRKTVGCFWNER 46
           T   F++ R TV CFW E+
Sbjct: 290 TVFSFVQVRGTVPCFWEEQ 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,688
Number of Sequences: 5004
Number of extensions: 39187
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)