Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g04f
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             226   1e-59
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.060
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         33   0.11 
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   5.3  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 27   6.9  
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)                       27   9.2  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  226 bits (552), Expect = 1e-59
 Identities = 103/155 (66%), Positives = 127/155 (81%), Gaps = 12/155 (7%)
 Frame = +2

Query: 29  MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTP------------REA 172
           MA+QTER++QKQ  +F NRK+ +G    +K LR+ ++VGLGFKTP            REA
Sbjct: 1   MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60

Query: 173 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 352
           IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++
Sbjct: 61  IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120

Query: 353 VHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 457
            H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 121 AHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 389 GDIVTIGECRPLSKTVRFNVLKV 457
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +2

Query: 209 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 388
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 389 GDIVTIGECRPLSKTVRFNVLKV 457
           GD V I E RPLS T R+ ++++
Sbjct: 63  GDRVRIMETRPLSATKRWRLVEI 85


>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 139 ILVVSQRFSAPLHTNTFLAVQ 77
           ILV+ Q F  P HTN F+A Q
Sbjct: 78  ILVLVQPFPLPYHTNAFIAAQ 98


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 236 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 373
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 180 PSIASRGVLKPRPTSLWYLNG 118
           P++  +GV  PRPT  WY  G
Sbjct: 654 PTLQCKGVGDPRPTITWYRKG 674


>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 754

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 89  KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 199
           + + V + + PL  H D+ + +K P   +   Y+DK+
Sbjct: 271 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 307


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 89   KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 199
            + + V + + PL  H D+ + +K P   +   Y+DK+
Sbjct: 1552 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 1588


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,234
Number of Sequences: 59808
Number of extensions: 313647
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)