Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g04f
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 208 2e-54
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 203 6e-53
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 198 2e-51
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 39 0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 37 0.009
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.35
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 31 0.46
At5g17670.1 68418.m02071 expressed protein 27 5.7
At4g26980.1 68417.m03882 expressed protein 27 5.7
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 5.7
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 27 7.5
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 27 9.9
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 27 9.9
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 27 9.9
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 208 bits (508), Expect = 2e-54
Identities = 98/144 (68%), Positives = 118/144 (81%), Gaps = 1/144 (0%)
Frame = +2
Query: 29 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 205
MA+QTE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAIEGTYID+KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60
Query: 206 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 385
FTG VSIRGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VK 119
Query: 386 IGDIVTIGECRPLSKTVRFNVLKV 457
GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 203 bits (495), Expect = 6e-53
Identities = 94/144 (65%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
Frame = +2
Query: 29 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 205
MA+QTE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAI+G Y+DKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60
Query: 206 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 385
FTG VSIRGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119
Query: 386 IGDIVTIGECRPLSKTVRFNVLKV 457
GD + IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 198 bits (482), Expect = 2e-51
Identities = 93/144 (64%), Positives = 113/144 (78%), Gaps = 1/144 (0%)
Frame = +2
Query: 29 MADQTERSFQKQPTVFLNRK-KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 205
MA+QTE++F KQP VFL+ K G G + + R+ K++GLGFKTPREAI+G YID KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60
Query: 206 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 385
FTG VSIRGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119
Query: 386 IGDIVTIGECRPLSKTVRFNVLKV 457
GD V IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHVIIGQCRPLSKTVRFNVLKV 143
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 245 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 421
G V KMQ+++V+ D L + YNR+ KR H +D IGD V + RP
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62
Query: 422 LSKTVRFNVLKV 457
LSK + V ++
Sbjct: 63 LSKNKHWIVAEI 74
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +2
Query: 233 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 412
+ + G V KMQ ++V+ D L + YNR+ KR H IGD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59
Query: 413 CRPLSK 430
RPLSK
Sbjct: 60 SRPLSK 65
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 31.5 bits (68), Expect = 0.35
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +2
Query: 233 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 412
+ + G V +T+ + L PKY R + + H P ++GD+V + +
Sbjct: 51 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108
Query: 413 CRPLSKTVRFNVLKV 457
RP+SKT F L V
Sbjct: 109 SRPISKTKSFVALPV 123
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 119 PLRYHKDVGL---GFKTP-REAIEGTYIDKKCP 205
P++YHKD G KT R AIE ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 165 RGVLKPRPTSLWYLN 121
RG L+PRP WYLN
Sbjct: 86 RGTLRPRPVLDWYLN 100
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 155 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 259
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 230 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 346
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 137 DVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL--TGVVQKMKMQRT 277
D+G+GF ++G +D +G+ S+R R++ TG + + ++ T
Sbjct: 364 DMGMGFDVDYLLVQGQVLDSASKASGDDSVRDRLIDRTGKLAFLLLEST 412
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 55 PKTTYSLSEPQERYWCEAEQKTVEIPQGC 141
P + S SE Q++Y C + + T ++ GC
Sbjct: 833 PFSEKSTSEKQKQYNCSSSENTSDVNDGC 861
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 253 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALLQG 378
S+ EDA DP +P++ I+ T +EH+ + L +G
Sbjct: 1470 SDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEG 1511
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 214 ASEGTLLVNVG---TLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKD 71
++EG+ L G +LNRL + +E H V+ +S LHT + A D
Sbjct: 495 SAEGSHLTGDGDRQSLNRLINQVASELHSPVMDPHYSQYLHTASSTAAPID 545
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,738,336
Number of Sequences: 28952
Number of extensions: 214686
Number of successful extensions: 530
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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