Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g01r
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    32   0.46 
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    31   0.60 
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    31   1.1  
At5g17240.1 68418.m02020 SET domain-containing protein contains ...    29   3.2  
At4g02710.1 68417.m00366 kinase interacting family protein simil...    29   4.3  
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    28   5.6  
At2g34780.1 68415.m04270 expressed protein                             28   5.6  
At1g66130.1 68414.m07505 oxidoreductase N-terminal domain-contai...    28   5.6  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    27   9.8  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   9.8  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = -1

Query: 718 DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 542
           D  K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 382 ERASGLSRGSISHNSRLFGEGCCLCWPGKRQS 477
           ERA+G S G    +SR     C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
 Frame = -1

Query: 685 ADCLSETKADE--QLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKV 512
           A+ ++ET   E  +    LK  + +  N   +K   C+++ S+       F+K + L  +
Sbjct: 479 AEDIAETMDAEVVEAQKMLKLAEAQRMNTDSRKAIFCVIMSSEDYID--AFEKLLRL-DL 535

Query: 511 PNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHAL 380
           P  +D+  +  L++ CL  K  +   T      C H+K+ K  L
Sbjct: 536 PGKQDREIMRVLVECCLQEKAFNKFYTVLASKLCEHDKNHKFTL 579


>At5g17240.1 68418.m02020 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 491

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 601 LKKYALCMLI-KSQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 425
           LKK  L + + +  LMT +    KD+ L+   N  + L   +++  CL  + +   ++ W
Sbjct: 57  LKKGELVLKVPRKALMTTESIIAKDLKLSDAVNLHNSLSSTQILSVCLLYEMSKEKKSFW 116

Query: 424 NYVKCYH 404
            Y   +H
Sbjct: 117 -YPYLFH 122


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 361 DYVFTRKERASGLSRGSISHNSRLFGEGCCL 453
           DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 691 HRADCLSETKADEQLVNKLKT-GDFKTENEPLKKYALCMLIKSQLMTKD-GKFKKDVALA 518
           H  D + E  +    + K++T GD+K EN  L +Y  C+L    +  +D G   K + LA
Sbjct: 227 HTVDLMLEAISKLPKMGKMQTFGDYKGENLFLNRYESCVLEWCDVCVEDFGPLMKLLRLA 286

Query: 517 KVPN 506
              N
Sbjct: 287 DGEN 290


>At2g34780.1 68415.m04270 expressed protein
          Length = 1297

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 138 KRDKQSYDEHRRKLNFGSRSNMLQQLNKIYRTDID 242
           +R+ Q  +  R KL FGS +N +  L++ + TD++
Sbjct: 401 RREFQCEELGRLKLEFGSLTNRMNLLDEYFSTDVE 435


>At1g66130.1 68414.m07505 oxidoreductase N-terminal
           domain-containing protein similar to AX110P [Daucus
           carota] GI:285739; contains Pfam profile PF01408:
           Oxidoreductase family NAD-binding Rossmann fold
          Length = 364

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 538 KKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 425
           KK   L + P A+D  ++EK+++AC  N       T W
Sbjct: 95  KKKHVLVEKPPAQDATELEKIVEACEYNGVQFMDGTIW 132


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 470 RLPGQQRQQPSPNSLELCEMLPRERPE 390
           R P ++R++ +PN+LE    LP++  E
Sbjct: 114 RAPAKEREEIAPNTLENVSKLPKQHQE 140


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 508 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 401
           ++  KL++ KL D  L +   +P +  WN  KC  E
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,752
Number of Sequences: 28952
Number of extensions: 314574
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)