Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f24r
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   207   3e-54
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    29   2.5  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    29   2.5  
U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione s-t...    27   7.6  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   10.0 
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   10.0 
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  207 bits (506), Expect = 3e-54
 Identities = 101/150 (67%), Positives = 119/150 (79%)
 Frame = -2

Query: 472 TRNMAEVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMA 293
           T++ A + E LKKKR FRKF YRGVDLDQLLDM  EQ  +L+         RGLKRK +A
Sbjct: 3   TQDDAHLAE-LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLA 61

Query: 292 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHY 113
           L+ K+++AKK A   EKP  VKTHLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG Y
Sbjct: 62  LIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFY 121

Query: 112 LGEFSVTYKPVKHGRPGIGATHSSRFIPLK 23
           LGEF+++YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 LGEFAISYKPVKHGRPGIGATHSSRFIPLK 151


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 453 STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 352
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 453 STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 352
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione
           s-transferase protein23 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 483 LSNKQETWLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN 352
           L  K  T +++     K  +   +L GEL+ I  L C  +N  N
Sbjct: 97  LRTKYFTMIKTDYEDGKEAYITETLPGELLRIEKLFCTFNNGEN 140


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 268   KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 167
             K+  P +E  EIV     + +I+ E+ G  VG+Y
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 268   KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 167
             K+  P +E  EIV     + +I+ E+ G  VG+Y
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 307 RKPMALVKKLRRAKKEAPPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTF 152
           +K + +++K+R   K++  N +  P +V   L+N+  V E+   +    N KTF
Sbjct: 560 QKVIQVIQKMRNLDKDSVQNIQGIPSVVSEFLKNLAKVREISDKMKENSNNKTF 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,443,466
Number of Sequences: 27780
Number of extensions: 198392
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)