Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f24r
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 462 WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSW 355
           W       RKS  S +SL   LI   ++ CP+  SW
Sbjct: 218 WKNDEGTLRKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 462 WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSW 355
           W       RKS  S +SL   LI   ++ CP+  SW
Sbjct: 218 WKNDEGTLRKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 462 WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSW 355
           W       RKS  S +SL   LI   ++ CP+  SW
Sbjct: 269 WKNDEGTLRKSP-SLTSLNAYLIKNQTITCPIKVSW 303


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 462 WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSW 355
           W       RKS  S +SL   LI   ++ CP+  SW
Sbjct: 218 WKNDEGTLRKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 83  CKAR*TRYRCYTQLKVHS 30
           CKA    + C  QLKVH+
Sbjct: 206 CKACGKGFTCSKQLKVHT 223


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -1

Query: 299 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF 153
           N    E   R+ R +S+  +RDR++  +  +H+      N  +    N+
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -1

Query: 299 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF 153
           N    E   R+ R +S+  +RDR++  +  +H+      N  +    N+
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -1

Query: 299 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF 153
           N    E   R+ R +S+  +RDR++  +  +H+      N  +    N+
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic
          acetylcholine receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 5  VVLDALLERNEP*AVCSTDTGSTVLYRL 88
          V+++ LL       VC   T ++ LYRL
Sbjct: 13 VIINVLLHGQVICFVCKDITSTSALYRL 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,162
Number of Sequences: 438
Number of extensions: 2274
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)