Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f24r
(497 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 222 9e-59
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 222 1e-58
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 222 1e-58
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 216 6e-57
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 215 2e-56
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 165 1e-41
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 66 1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 47 6e-06
At5g47225.1 68418.m05823 hypothetical protein 30 1.00
At3g22380.1 68416.m02825 expressed protein 29 1.7
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 2.3
At5g26717.1 68418.m03160 hypothetical protein 27 5.3
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 27 7.0
At3g09270.1 68416.m01101 glutathione S-transferase, putative sim... 27 7.0
At5g22240.1 68418.m02589 ovate family protein 60% similar to ova... 27 9.3
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 27 9.3
At1g66980.1 68414.m07616 protein kinase family protein / glycero... 27 9.3
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 222 bits (543), Expect = 9e-59
Identities = 99/140 (70%), Positives = 119/140 (85%)
Frame = -2
Query: 442 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKK 263
L KKR F+KF+++GVDLD LLDMP + L+EL RGL RKPMAL+KKLR+AK
Sbjct: 13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72
Query: 262 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 83
+AP EKPE+V+THLRNM+I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKP
Sbjct: 73 DAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKP 132
Query: 82 VKHGRPGIGATHSSRFIPLK 23
V+HG+PG GATHSSRFIPLK
Sbjct: 133 VRHGKPGHGATHSSRFIPLK 152
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 222 bits (542), Expect = 1e-58
Identities = 101/138 (73%), Positives = 117/138 (84%)
Frame = -2
Query: 436 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKKEA 257
KKR F+KF ++GVDLD LLDM + L++L RGL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 256 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 77
P EKPE V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 75 PAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 134
Query: 76 HGRPGIGATHSSRFIPLK 23
HGRPG+GATHSSRFIPLK
Sbjct: 135 HGRPGVGATHSSRFIPLK 152
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 222 bits (542), Expect = 1e-58
Identities = 101/138 (73%), Positives = 117/138 (84%)
Frame = -2
Query: 436 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKKEA 257
KKR F+KF ++GVDLD LLDM + L++L RGL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 256 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 77
P EKPE V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 75 PQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 134
Query: 76 HGRPGIGATHSSRFIPLK 23
HGRPG+GATHSSRFIPLK
Sbjct: 135 HGRPGVGATHSSRFIPLK 152
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 216 bits (528), Expect = 6e-57
Identities = 99/138 (71%), Positives = 116/138 (84%)
Frame = -2
Query: 436 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKKEA 257
KKR F+KF++RGVDLD LLDM + L++L RGL RKPMAL+KKLR+AK EA
Sbjct: 13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72
Query: 256 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 77
P EKP V+THLRNMIIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 73 PAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 132
Query: 76 HGRPGIGATHSSRFIPLK 23
HGRPG+GAT+SSRFIPLK
Sbjct: 133 HGRPGVGATNSSRFIPLK 150
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 215 bits (524), Expect = 2e-56
Identities = 100/138 (72%), Positives = 115/138 (83%)
Frame = -2
Query: 436 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKKEA 257
KKR F+KF++RGVDLD LLDM E L++ RGL RKPMAL+KKLR+AK EA
Sbjct: 12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71
Query: 256 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 77
P EKP V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 72 PAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 131
Query: 76 HGRPGIGATHSSRFIPLK 23
HGRPG+GAT+SSRFIPLK
Sbjct: 132 HGRPGVGATNSSRFIPLK 149
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 165 bits (401), Expect = 1e-41
Identities = 83/144 (57%), Positives = 104/144 (72%), Gaps = 6/144 (4%)
Frame = -2
Query: 436 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKKEA 257
KKR F+KF++RG ++D LL M N L +L + RGLK++P+ L+KKLRRAKKEA
Sbjct: 17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76
Query: 256 PPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 83
K PE+VKTHLRNMIIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K
Sbjct: 77 SDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKK 136
Query: 82 VKHGRPGIGA----THSSRFIPLK 23
V H RP I S+RFIPL+
Sbjct: 137 VNHHRPRICGCCCFRRSTRFIPLR 160
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 66.1 bits (154), Expect = 1e-11
Identities = 33/58 (56%), Positives = 40/58 (68%)
Frame = -2
Query: 436 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKK 263
KKRIF+KF++RGVDLD LLDM E L++ RG RKPMAL+KKLR+A K
Sbjct: 12 KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 47.2 bits (107), Expect = 6e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = -2
Query: 217 RNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 68
R I+PE V S V IYNGKT + +I +GH GEF+ T K KH +
Sbjct: 161 RRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210
>At5g47225.1 68418.m05823 hypothetical protein
Length = 351
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 492 LILLSNKQETWLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN 352
L L +++E W R+ + + + SL G+ I ++S IC + SW+
Sbjct: 165 LDLAIHEEEVWRRANRREEQPEGTKPSLEGQHIDMASPICFIDGSWH 211
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 284 EAASRQERGSSE*EARDREDSLEKHDHRSRD---GRFNCRHLQRK 159
EAA ++RG S + RDRE ++ R RD R N R +R+
Sbjct: 43 EAARLRDRGGSNKKDRDRERDRDRERERERDRERDRLNSRSKRRR 87
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 139 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 38
+KPE+ G Y E Y P+K PG ++ SSR
Sbjct: 20 MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53
>At5g26717.1 68418.m03160 hypothetical protein
Length = 141
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 496 LFNSSVK*TRNMAEVDETLKKKRIFRKFT 410
L+NS + + N + +D+T+KKK + RK T
Sbjct: 35 LYNSLIA-SANTSRIDQTIKKKSLKRKMT 62
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 332 ARTGMH*FHELLIGHI--KELIEINSPVSELPENTLFL 439
A TG H F E+L+G + K +I + V LPE L L
Sbjct: 758 AHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLIL 795
>At3g09270.1 68416.m01101 glutathione S-transferase, putative
similar to glutathione transferase GB:CAA71784 [Glycine
max]
Length = 224
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = -2
Query: 286 KKLRRAKKEA---PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGH 116
+K+ A K+A P +E+ + VK + + + +G + + G+T V+I + IG+
Sbjct: 107 EKVMLAVKKACWGPESEREKEVKEAYEGLKCLEKELGDKL-FFGGETIGFVDIAADFIGY 165
Query: 115 YLGEF 101
+LG F
Sbjct: 166 WLGIF 170
>At5g22240.1 68418.m02589 ovate family protein 60% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 196
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 377 IKELIEINSPVSELPENTLFLEGFVDL-SHVSCLFDRRIK 493
+KEL+ ++ P++ L + FVD+ SH+ DRR K
Sbjct: 130 LKELLRCFLDINPSPQHNLIVRAFVDVCSHLQPPHDRRGK 169
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites at
intron 18
Length = 1606
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -2
Query: 202 VPEMVGSIVGIYNGKT---FNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFI 32
+P +V +G+Y G N VEIK + + G S+ KPV + A SS +
Sbjct: 1040 IPSIVADHIGVYLGCVKGRVNVVEIKEDSLVSKPGGLSLLGKPVSDKPLALPAGESSSMM 1099
Query: 31 PLK 23
L+
Sbjct: 1100 GLE 1102
>At1g66980.1 68414.m07616 protein kinase family protein /
glycerophosphoryl diester phosphodiesterase family
protein similar to leaf rust resistance kinase Lr10
GI:1680685 from [Triticum aestivum]; contains Pfam
profiles PF03009: Glycerophosphoryl diester
phosphodiesterase family, PF00069: Protein kinase domain
Length = 1109
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 229 KTHLRN-MIIVPEMVGSIVGIYN-GKTFNQVEIKPEMIGHYLGEFSVTYKP 83
+THLRN IIVPE + S+ GI+ T+++++ I + E ++ P
Sbjct: 428 QTHLRNRSIIVPE-ISSVAGIFTFSLTWHEIQSLTPAISNPFRENGMSRNP 477
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,974,772
Number of Sequences: 28952
Number of extensions: 190431
Number of successful extensions: 581
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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