Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f24f
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   214   8e-57
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   213   1e-56
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    52   6e-08
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   1.8  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    27   1.8  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    27   2.4  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    26   3.2  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   4.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.6  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.6  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    25   9.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   9.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   9.8  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.8  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  214 bits (522), Expect = 8e-57
 Identities = 99/140 (70%), Positives = 112/140 (80%)
 Frame = +2

Query: 56  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 235
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74

Query: 236 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 415
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 75  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 134

Query: 416 VKHGRPGIGATHSSRFIPLK 475
            KHGRPGIGATHSSRFIPLK
Sbjct: 135 TKHGRPGIGATHSSRFIPLK 154


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  213 bits (520), Expect = 1e-56
 Identities = 99/140 (70%), Positives = 112/140 (80%)
 Frame = +2

Query: 56  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 235
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73

Query: 236 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 415
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 74  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 133

Query: 416 VKHGRPGIGATHSSRFIPLK 475
            KHGRPGIGATHSSRFIPLK
Sbjct: 134 TKHGRPGIGATHSSRFIPLK 153


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 52.0 bits (119), Expect = 6e-08
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = +2

Query: 266 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 412
           +KT +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 233 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 334
           K A P++KP +  THL +++I    VG  +  ++
Sbjct: 60  KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 328 NADN*TDHLGNDDHVSQVSLHDLWLLIR 245
           N  N T H+ ++  V +V++HD+W  I+
Sbjct: 18  NVPNETKHIFDEISVKEVAVHDIWKRIQ 45


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 57  SRKSVFSGSSLTGELISISSLICPMSNSWN 146
           S+ +  +   +TG +++ISS +C + N +N
Sbjct: 145 SQAAALASKDITGTIVAISSELCAVENQFN 174


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 468 GMNLELCVAPIPGLPCFTGLYVTENS 391
           G+N+ LCV   PG P  TG  ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 459 LELCVAPIPGLPCFTGLYVTE 397
           LELC    PG+P   G++  E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = +2

Query: 302 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 451
           E+  + VG+YNGK  F +  + P+ +      H L E ++   KP++   PG+  TH
Sbjct: 23  EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 332 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 418
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +3

Query: 21  NKQET-WLRST-KPSRKSVFSGSSLTGEL 101
           NKQET  L++T +P+ K +  GSS TG++
Sbjct: 39  NKQETAGLQTTSRPTAKQLVGGSSWTGKI 67


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 15  LSNKQETWLRSTKPSRKSVFSGSSLTGEL 101
           +S K  TW R  +   KS  S SSL G++
Sbjct: 317 ISTKSITWSRKARRISKSQTSVSSLEGQM 345


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 6   LILLSNKQETWLRSTKPSRKSVFSGSSLTGELISISSLIC 125
           L LLSN  + +  S +  R  V+   SL   L+S+ + IC
Sbjct: 195 LPLLSNTIKRFDESNEEDRHGVYCVLSLMENLLSVDNSIC 234


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 185 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 280
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 227 AKKEAPPNEKPEIVKTHLRNMIIV----PEMVGSIVGIYNGKTFNQVEIKPEMIG 379
           A  E  P+  P+++ + L +  +     P + GS+  +Y    FN V++  +  G
Sbjct: 192 AASEISPSSSPQLLTSFLPSGSVSNPSSPYLQGSVGALYEADAFNFVDVMSQASG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,086
Number of Sequences: 5004
Number of extensions: 38721
Number of successful extensions: 110
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)