Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f23r
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    33   0.26 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    33   0.26 
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    29   4.3  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    29   4.3  
At4g10950.1 68417.m01780 GDSL-motif lipase/hydrolase family prot...    28   5.6  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    28   7.4  
At2g41660.1 68415.m05147 expressed protein contains Pfam profile...    27   9.8  
At1g24090.1 68414.m03039 RNase H domain-containing protein very ...    27   9.8  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -1

Query: 726 MSSSNKELE-EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSR 568
           M   N+  E EKL+  NS L+  Y  ++  S ++ENQ K  + QNV    ++DK R
Sbjct: 288 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -1

Query: 726 MSSSNKELE-EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSR 568
           M   N+  E EKL+  NS L+  Y  ++  S ++ENQ K  + QNV    ++DK R
Sbjct: 289 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 696 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 580
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 696 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 580
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g10950.1 68417.m01780 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL1 GI:15054382 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 400

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/103 (21%), Positives = 49/103 (47%)
 Frame = -1

Query: 735 AGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTME 556
           AG + SS  EL +++  ++    +    +Q +    + K S  + +V+N +   S    +
Sbjct: 151 AGIILSSGSELGQRVSFAMQVEQFVDTFQQMILSIGE-KAS--ERLVSNSVFYISIGVND 207

Query: 555 YCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNLALK 427
           Y +  ++ N  ++   Y P+NF   +A N  + +   YN+ ++
Sbjct: 208 YIH-FYIRNISNVQNLYTPWNFNQFLASNMRQELKTLYNVKVR 249


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 588 LIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNF 490
           +++D      EY  KL + +G     KYFP  F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 297

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 50  PATSPSCPNAIRSPEASTILPS 115
           P TSP+  + +RSP +S ++PS
Sbjct: 22  PVTSPARSSHVRSPSSSALIPS 43


>At1g24090.1 68414.m03039 RNase H domain-containing protein very low
           similarity to GAG-POL precursor [Oryza sativa (japonica
           cultivar-group)] GI:5902445; contains Pfam profiles
           PF00075: RNase H, PF04134: Protein of unknown function,
           DUF393
          Length = 535

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 40  VRETSYFTIVSKCHTVSRSVHNPTELQSIVVLAIVDEEQDVVFVLR 177
           V  +S F I S     SRS    +++ S  V++ VD+E+D  FV+R
Sbjct: 43  VAVSSVFGICSVHSYSSRSKAVKSKMLSSTVVSAVDKEKDAFFVVR 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,773
Number of Sequences: 28952
Number of extensions: 307130
Number of successful extensions: 946
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)