Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f23f
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    31   0.94 
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584...    29   2.9  
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468...    29   3.8  
03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223     28   5.0  
09_02_0437 - 9399982-9401253                                           28   6.7  
02_05_0579 + 30114127-30114177,30114691-30115386,30115883-301160...    27   8.8  
01_01_0759 + 5855467-5855639,5855753-5855815,5855914-5856057,585...    27   8.8  

>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +3

Query: 69   SCVLAVSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNV 248
            S  L+ S G     +GS+ ++   LE    N I+T   D  +RQ L        S++ N+
Sbjct: 1126 SSALSYSLGWLSPPSGSVIAAQL-LELGKNNEIVT---DQVLRQELALVMPKIYSLLSNL 1181

Query: 249  VNNLIIDKSRNTMEYCYKLWVGNG 320
            + +  +D  +  +E C  +WVG+G
Sbjct: 1182 IGSDEMDIVKVVLEGCRWIWVGDG 1205


>01_01_0758 +
           5843702-5843874,5844021-5844083,5844174-5844290,
           5847180-5847945
          Length = 372

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 408 LALKLGPTLDPANERLAYGDGKEKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSS 584
           +AL  GP L P N   A+G G E  S   + +    W    +   + N  ++ ++ L S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGSSGAATR--ARWVTGTLLMLLSNVTWSLWIVLMS 202


>01_06_1783 +
           39845998-39846174,39846260-39846534,39846758-39846891,
           39846992-39847116,39847312-39847494,39847610-39847644,
           39847756-39847912,39847936-39848049,39848143-39848235,
           39848316-39848455,39848606-39848676,39848759-39848839,
           39851475-39851954,39852110-39852387,39853346-39854143
          Length = 1046

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 281 VPTLVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAH 120
           +P L N  VV  ++   AL  V+V+    +S     G+D +VQ   +F V  AH
Sbjct: 322 LPVLGNVTVVTLVILPLALIFVVVWAVHQNSPFAWVGQDLMVQCNDDFLVMFAH 375


>03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223
          Length = 219

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -1

Query: 206 QALTDSAVVVTGEDAVVQFLLEFFVRTAHASRGHFSDAGADGEHARREHH 57
           Q  T +  +     A  Q  LE F+  A A  G     GADG    R HH
Sbjct: 64  QGATGNGFLRPAGAAAGQMTLEDFLSRAGADSGSGGGGGADGARWARAHH 113


>09_02_0437 - 9399982-9401253
          Length = 423

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 233 GALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAHASRG 108
           G +  VL+ +A    AVV  GED V ++ +E  VR + A+RG
Sbjct: 300 GGILTVLIKRARRP-AVVAGGEDDVEEWAVEKSVRLSEATRG 340


>02_05_0579 +
           30114127-30114177,30114691-30115386,30115883-30116083,
           30116354-30116658,30116944-30117073
          Length = 460

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 203 ALTDSAVVVTGEDAVVQFLLEFFVRTAHASRGHFSDAG 90
           A  DS+  + G  A+    L F   T  +S G+F D G
Sbjct: 340 ARADSSHCIPGRQAISNISLSFSGLTGESSAGYFQDCG 377


>01_01_0759 +
           5855467-5855639,5855753-5855815,5855914-5856057,
           5856146-5856920
          Length = 384

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +3

Query: 408 LALKLGPTLDPANERLAYGDGKEKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSST 587
           +AL  GP + P N   A+G G     +  S    T W    +   + N  ++ +  L ++
Sbjct: 155 IALYAGPAISPVNHHRAFGGGGGGGHESASATTRTRWVKGTLLMLLSNATWSLWTVLMAS 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,139
Number of Sequences: 37544
Number of extensions: 300978
Number of successful extensions: 994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)