Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f23f
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)                      29   2.2  
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)              29   2.2  
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)           29   2.9  
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)                      28   6.8  
SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -3

Query: 330 QCAVRCRPTACSSTPWCSDSCQ*SGC*LHSG*WSPCLGSRIPSSDGQRCRSHR*GCCCTV 151
           +C   C+   CS++  C  SC   GC L+    +     +   +    C+S   G  CT 
Sbjct: 219 KCGKDCQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTG 278

Query: 150 S 148
           S
Sbjct: 279 S 279


>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +1

Query: 157 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXX---XXXXVGTPWSTATSCGSATDST 327
           T  +SPV TT+L+     T + A AP                  TP  T  +  S  D+T
Sbjct: 150 TLTASPVVTTSLASAPVVTTSLASAPVETTSLASTPVETTSLASTPVDTTLTASSPVDTT 209

Query: 328 LSESTSPITLDSSWP 372
           L+ S+   T  ++ P
Sbjct: 210 LTASSPVETTPTASP 224


>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = -1

Query: 350 IGEVLSDNVLSVAD---PQLVAVLH-GVPTLVNDQVVNYILDDGALALVLVFQALT--DS 189
           + EV+   VL+      P   A +H G+P  V    VN +   G  A+ L +QA+   DS
Sbjct: 54  VSEVILGQVLTAGQGQGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDS 113

Query: 188 AVVVTG 171
            +VV G
Sbjct: 114 NIVVAG 119


>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
          Length = 249

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 408 LALKLGPTLDPANERLAYGD 467
           +++KL P +DP   RLAYGD
Sbjct: 6   ISVKLPPDIDPTKARLAYGD 25


>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +1

Query: 157 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATDSTLSE 336
           TTA++ VTT   +     T T A A              V T  +T T+  +A  +  + 
Sbjct: 571 TTAAATVTTVTTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTV 630

Query: 337 STSPITL 357
           +T+  TL
Sbjct: 631 TTAAATL 637



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 157 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATDSTLSE 336
           TTA++ VTT A +     T T A A              V T  +T T+  +A  +TL+ 
Sbjct: 601 TTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTTVTTAAATLTTVTTAA-ATLTT 659

Query: 337 STSPIT 354
           + + +T
Sbjct: 660 AAATVT 665



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +1

Query: 157 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATDSTLSE 336
           TTA++ VTT   +     T T A A              V T  +T T+  +A  +  + 
Sbjct: 581 TTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTTV 640

Query: 337 STSPITL 357
           +T+  TL
Sbjct: 641 TTAAATL 647


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/74 (27%), Positives = 32/74 (43%)
 Frame = +1

Query: 127 VLTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSC 306
           VLT   +R    A++ +TT   +V A N  T    P               TP++T T+ 
Sbjct: 84  VLTVLLKRELIAATATITTYTATVTAPNATT--TTPTATTTTTTTTTTT--TPYATTTTP 139

Query: 307 GSATDSTLSESTSP 348
            + T +  + +TSP
Sbjct: 140 NTTTTTPNTTTTSP 153


>SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)
          Length = 425

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 157 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATS---CGSATDST 327
           TT ++  TTTA +     T T A A                T  +TAT      +AT+ T
Sbjct: 128 TTTAAEATTTAAATEVTTTTTAAEATTTATEVTTTTTATEVTMTTTATELTMTTTATEVT 187

Query: 328 LSESTSPITLDSS 366
           ++ +   +T+ ++
Sbjct: 188 MTTTAKEVTMTTT 200



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/63 (28%), Positives = 23/63 (36%)
 Frame = +1

Query: 157 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATDSTLSE 336
           TTA+   TTTA +  A  T T A A                T     T+   AT +    
Sbjct: 343 TTAAEVTTTTAAAAEA--TTTAAEATTTAAEATTTAAEATTTAAEATTTAAEATTTAAEA 400

Query: 337 STS 345
           +TS
Sbjct: 401 TTS 403


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 24/126 (19%), Positives = 41/126 (32%)
 Frame = +1

Query: 130 LTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCG 309
           +T+ +     T ++ VTTT  +     T   A A                T   TAT+  
Sbjct: 307 VTETAAAATATVTATVTTTTTATATATTTATATATTTATATATATATATATATVTATATA 366

Query: 310 SATDSTLSESTSPITLDSSWPXXXXXXXXXXXXXXXXXAPLLIPRTRDLHTAMVRKRTAT 489
           +AT +     T  +T  ++                   A + +  T    TA V    + 
Sbjct: 367 TATVTATVTVTVTVTATATATVTATATVTVTAAAARATATVTVTVT---VTATVHNSNSN 423

Query: 490 SSVGSS 507
           S+  S+
Sbjct: 424 SNSNSN 429


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 301 SCGSATDSTLSESTSPITLDSSWP 372
           S GS TDS  S STSP+ L  + P
Sbjct: 619 SAGSGTDSASSRSTSPLNLPYTSP 642


>SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)
          Length = 236

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 301 SCGSATDSTLSESTSPITLDSSWP 372
           S GS TDS  S STSP+ L  + P
Sbjct: 64  SAGSGTDSASSRSTSPLNLPYTSP 87


>SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -1

Query: 326 VLSVADPQLVAVLHGVPTLVNDQVVNYILDDGALALV----LVFQALTDSAVVVTGEDAV 159
           VLS+A   L+A + G+P L  +  V+++  D     V    LVF  +T + +VV   +  
Sbjct: 110 VLSLAISDLLASIIGIPLLTVETWVDFVTTDSICRAVRYFQLVFSKITFNNLVVIAAEKY 169

Query: 158 VQFLLEFFVRTAHASRG 108
           +     F++ ++   +G
Sbjct: 170 LGINHLFYLPSSRFVKG 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,327,879
Number of Sequences: 59808
Number of extensions: 353063
Number of successful extensions: 1214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)