Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f23f
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    28   0.062
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.14 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.44 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 0.062
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 135 KELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYKL 305
           +E E+++ ++IL G YD+ +R S E    G   +  N+    I      TMEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 135 KELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYKL 305
           +E E+++ ++IL G YD+ +R S E    G   +  N+    I   S   MEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQL 84


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 84   VSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSA 191
            V AG+ E SAG+ +S       K+   +  G YD +
Sbjct: 1242 VGAGIAETSAGTSNSRGAAQMSKVPRDVSEGIYDGS 1277


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 234 WSPCLGSRIPSSDGQRCRSHR 172
           + P LG  +  S GQ+ R+HR
Sbjct: 118 FKPWLGDGLLISTGQKWRNHR 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,976
Number of Sequences: 438
Number of extensions: 3371
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)