Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f23f
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    33   0.20 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    33   0.20 
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    29   3.2  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    29   3.2  
At4g10950.1 68417.m01780 GDSL-motif lipase/hydrolase family prot...    29   3.2  
At3g47620.1 68416.m05184 TCP family transcription factor, putati...    29   3.2  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    28   5.6  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 120 MSSSNKELE-EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSR 278
           M   N+  E EKL+  NS L+  Y  ++  S ++ENQ K  + QNV    ++DK R
Sbjct: 288 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 120 MSSSNKELE-EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSR 278
           M   N+  E EKL+  NS L+  Y  ++  S ++ENQ K  + QNV    ++DK R
Sbjct: 289 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 150 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 266
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 150 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 266
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g10950.1 68417.m01780 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL1 GI:15054382 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 400

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
 Frame = +3

Query: 93  GVTEMSAGS--MSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 266
           GV   SAG+  + SS  EL +++  ++    +    +Q +    + K S  + +V+N + 
Sbjct: 143 GVNYASAGAGIILSSGSELGQRVSFAMQVEQFVDTFQQMILSIGE-KAS--ERLVSNSVF 199

Query: 267 DKSRNTMEYCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNLALK 419
             S    +Y +  ++ N  ++   Y P+NF   +A N  + +   YN+ ++
Sbjct: 200 YISIGVNDYIH-FYIRNISNVQNLYTPWNFNQFLASNMRQELKTLYNVKVR 249


>At3g47620.1 68416.m05184 TCP family transcription factor, putative
           auxin-induced basic helix-loop-helix transcription
           factor - Gossypium hirsutum, EMBL:AF165924
          Length = 489

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/73 (21%), Positives = 30/73 (41%)
 Frame = -1

Query: 233 GALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAHASRGHFSDAGADGEHARREHHE 54
           GA++  L F         +TG+  +           ++ + G  SD G D  + +R HH 
Sbjct: 391 GAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINEDSNNNEGGRSDGGGDHHNTQRHHHH 450

Query: 53  KFHYHSCLFRSLS 15
           +  +H  +   L+
Sbjct: 451 QQQHHHNILSGLN 463


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 258 LIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNF 356
           +++D      EY  KL + +G     KYFP  F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,210
Number of Sequences: 28952
Number of extensions: 232551
Number of successful extensions: 700
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)