Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f22r
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701...    34   0.15 
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           32   0.60 
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     29   3.2  
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667...    29   3.2  
02_04_0125 - 19982330-19982538,19983507-19983633,19983978-199840...    29   5.6  
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540...    28   9.8  

>06_03_1511 - 30669292-30669401,30669894-30669930,30670012-30670107,
            30670186-30670281,30670679-30670828,30670956-30671100,
            30671178-30671251,30671325-30671445,30671697-30671821,
            30671898-30672047,30672249-30672324,30672496-30672557,
            30672597-30672839,30673354-30673683,30673776-30673932,
            30674008-30674139,30674219-30674277,30674734-30674798,
            30674878-30675094,30675413-30675499,30675655-30675750,
            30675938-30676003,30676096-30676287,30676380-30676532,
            30676812-30677052,30677322-30677515,30678212-30678348,
            30678474-30678480,30678708-30678830,30679370-30679427,
            30680018-30680090,30680493-30681765
          Length = 1714

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +2

Query: 386  NELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITD 565
            NEL ++    F+L V     +I  +NI+ QR S   + V+  N + G+     +++ I +
Sbjct: 895  NELKSEELESFLLVVDGANFSIPELNILMQRYSGACSWVNHANNIVGKLLERNDYDNIVE 954

Query: 566  DVLGALE 586
            ++ G L+
Sbjct: 955  ELTGILK 961


>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +2

Query: 503 HKLNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSYQFVH 646
           ++L G  GED++ LNWET     LGA      G+ H +H   + +FVH
Sbjct: 455 NELIGKRGEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -3

Query: 760 DILEEQLYNSIVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 587
           DIL E LY S  ++DY  D      ++L +  +   + N++ + ++NN+   +     +W
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIV--IDDIW 294

Query: 586 LQGSKDIVRDCFP 548
            + +  +++  FP
Sbjct: 295 SKSAWQVIQCAFP 307


>07_03_1566 +
           27766336-27766393,27766480-27766609,27766728-27766797,
           27767134-27767196,27767741-27767815,27768035-27768154,
           27768508-27768549,27768651-27768725,27768909-27769055,
           27769165-27769302,27769448-27769562,27769658-27769746,
           27770062-27770184
          Length = 414

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 376 ENNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYI 197
           E     F    TE+ + L      NP    +A   + VD+ R   Y+ PAKY    L ++
Sbjct: 159 ERRTFLFSATMTEKVKKLRRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHV 218

Query: 196 YNR-EYSKALTLSRTLETS 143
            N+   S  +   RT E++
Sbjct: 219 LNKMPGSMIMVFVRTCEST 237


>02_04_0125 -
           19982330-19982538,19983507-19983633,19983978-19984053,
           19984993-19985184,19985906-19986474
          Length = 390

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 23/101 (22%), Positives = 48/101 (47%)
 Frame = +2

Query: 257 TIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADFRACFVLTVAE 436
           T+D++ + G  +AVRV++  Q +  +++  + L   +  L Q+ +L  D +   +    E
Sbjct: 274 TVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSLQQA-KLIKDGQTQMLKKETE 332

Query: 437 GKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETI 559
               +     +  R+S +V    + N   G D S +NW+ +
Sbjct: 333 RLKQL----SVRHRRSRSVTSCFEANSFGGGDPSAINWQML 369


>06_01_0733 +
           5405889-5405922,5405923-5405975,5406430-5406543,
           5407464-5407523,5408139-5408217,5410661-5410728,
           5411198-5411302,5411887-5411994,5412087-5412279,
           5412818-5412897,5413309-5413536,5414112-5414252,
           5414341-5414466,5414561-5414611,5414879-5414956,
           5415814-5415960,5416685-5417179
          Length = 719

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 8   NISLLLILVGFREYLKYNLKCLNTPSVMFGTSDHSTIV 121
           N+   L+ VG RE+   +L    TP V   TSDH  I+
Sbjct: 349 NVPANLLCVGHREFPSDSLPVQETPLVSRKTSDHVDIL 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,723,658
Number of Sequences: 37544
Number of extensions: 391825
Number of successful extensions: 1241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)