Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f22f
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 30 1.2
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 30 1.2
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 30 1.5
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 29 2.7
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 29 2.7
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 28 6.1
Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 156 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 266
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 156 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 266
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 213 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 389
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 213 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 389
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +3
Query: 36 PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 203
P +K V+V LC+ +LY + S + + EQLY +S+ A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 204 KSEVITNVVNKLIRNNKMNCMEYAY 278
+ E N++N + C+E AY
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAY 1004
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +3
Query: 36 PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 203
P +K V+V LC+ +LY + S + + EQLY +S+ A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 204 KSEVITNVVNKLIRNNKMNCMEYAY 278
+ E N++N + C+E AY
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAY 1004
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 153 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 326
A Y S +K + EEK E I N + R K + ++ L+ S+D+ RDC
Sbjct: 29 ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87
Query: 327 VEFRLIFA 350
++ FA
Sbjct: 88 IDMDAYFA 95
>Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical
protein F44F1.3 protein.
Length = 646
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 374 VHKLNGVFGEDKSELNWETITDDVLGA-LEP 285
VHK+NG+F ++K + E I D LEP
Sbjct: 419 VHKINGIFSDNKKVVACEIINDSTQDIDLEP 449
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 507 KVYFKILNTERNQYLVLGVGTNPNGDH 587
+ YF++L+ E N+Y+++ N +G H
Sbjct: 156 RAYFRVLSAEDNKYILIACHANLHGLH 182
>Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical
protein F43A11.3 protein.
Length = 319
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 261 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 350
C+ Y Y+L + +KD+ RDCF F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,876
Number of Sequences: 27780
Number of extensions: 249133
Number of successful extensions: 952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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