Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f21r
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   4.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   8.3  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -1

Query: 563 NIYFLLTKVSFLPPKISFYPIWGNLPWFPDRCVRDIAQNRN*VYLQFQIK*GCYRIYNRC 384
           N  FL++K +  P   + YPI         RC  +  +  +  Y  FQ      +    C
Sbjct: 541 NTIFLISKYASSPSFFNEYPI------LKFRCDFENVRTMDRFYQSFQKALSMNKSQPSC 594

Query: 383 LFNTEMHDFE*FFEHLSR-DHEMIS-FSDVV 297
           L  ++++DF  FF + SR ++E  S  SD+V
Sbjct: 595 LSFSKLNDFVVFFNNYSRFEYEKESKRSDIV 625


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 404 YRIYNRCLF-NTEMHDFE*FFEHLSRDHEMISFSDVVLGTCWTQLFR 267
           ++ + +C F NT  +D +  F+H    HE     D V G    Q F+
Sbjct: 241 FKGHPKCEFCNTHFYDDDELFKHCREKHERCYICDQVAGRPTHQYFK 287


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 352 DFSNIYPVIMK*SLSRTWYLVLVGLNSFEYIKFKR 248
           DFS++YP IM+       Y  L+  N+ E +K K+
Sbjct: 587 DFSSLYPSIMQ--AHNLCYTTLLDSNTAELLKLKQ 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,370
Number of Sequences: 5004
Number of extensions: 51521
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)