Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f21r
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0002 - 34139-34234,34337-34345,34806-35048,35931-36003,361...    28   6.5  

>10_01_0002 -
           34139-34234,34337-34345,34806-35048,35931-36003,
           36184-36265,36398-36580,36663-36702,36814-36886,
           37022-37290
          Length = 355

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 386 IDYIFCNNLILFETANKLSFYFVLYP*HSGPGT-KVNYPKWGKMKFWGV 529
           IDY+  NNL+   TA K+  +F+L    +  GT ++ +P +    FWGV
Sbjct: 177 IDYMATNNLVQAATAAKVE-HFILV---TSLGTNRIGFPAFLLNLFWGV 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,308,166
Number of Sequences: 37544
Number of extensions: 257387
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)