Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f21r
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine re...    29   3.4  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine
           receptor, class w protein137 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 207 KFLFYKSIIKIHCVLLNFMYSKELSPTSTK 296
           K L Y+SII I C+L+N ++S  L+  S +
Sbjct: 35  KVLSYESIISITCILVNILHSAILTRKSMR 64


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 351 SFKIVHLCIK*TSIIYSVTTSFYLKLQINLVSILCYI 461
           SF + +LC+   S ++S   S YL   +NL  I+ ++
Sbjct: 325 SFILAYLCLPYDSTVHSTDASTYLAPTLNLTLIISFL 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,828
Number of Sequences: 27780
Number of extensions: 279668
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)