Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f21f
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.4
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 27 2.4
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 27 2.4
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 27 2.4
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 4.1
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 26 5.5
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 7.2
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 9.5
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 25 9.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.5
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 9.5
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 140 PIFGPSEANYIFGSKLKCRFSDNNL---KKIGSEVKSVPSMPINYFGSKN 280
PIF ++ NY+ + C+ +++ KK EV + S+ +N +G ++
Sbjct: 1998 PIFPDNDINYLIERRFLCKVNESQFFISKKSDFEVVNASSLVLNEYGCEH 2047
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 200 SDNNLKKIGSEVKSVPSMPINYFGSKNKFNTYSN 301
+ N +KK+G K+VP +P++ F N +N
Sbjct: 172 TSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTN 205
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 200 SDNNLKKIGSEVKSVPSMPINYFGSKNKFNTYSN 301
+ N +KK+G K+VP +P++ F N +N
Sbjct: 172 TSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTN 205
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 200 SDNNLKKIGSEVKSVPSMPINYFGSKNKFNTYSN 301
+ N +KK+G K+VP +P++ F N +N
Sbjct: 172 TSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTN 205
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 617 RSFNPR*FT-TFFGFAVLRASLLAYIYIFIKTNYNIQESAFIYILLYY 477
R FNP+ T T + A+L F+ TNY ++ + F + YY
Sbjct: 536 RYFNPKNNTPTNYFLALLMCGEFERAISFLHTNYPVEATHFAVAMAYY 583
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 120 WFTYLWTRIFVRTQFFFVNGFTEILFLFRY*NLFW 16
W+ LW + F + F+ + F+FRY L W
Sbjct: 14 WWNALWVKTFFQPDEFYQSLEVAHHFIFRYGFLTW 48
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 167 NWLRWARILVWTQICFGSLTF 105
NW WA+++V ICF LTF
Sbjct: 76 NWPLWAKLVVTFDICF--LTF 94
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 636 VIRDILSFVQPSLIYYFLWF 577
+I+D+L+FVQP+LI + F
Sbjct: 258 LIQDVLAFVQPTLIQKTILF 277
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 615 FVQPSLIYYFLWFCCFTRLF 556
F Q SLI Y LWF T L+
Sbjct: 61 FDQKSLILYLLWFSTLTLLW 80
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +2
Query: 35 RNKNNISVKPFTKKN*VRTKILVQR*VN-----QNKFGSKPIFGPSEANYIFGSKLKCRF 199
RN ++ KPF K + + L+Q +N+F KP PSE + GSK
Sbjct: 503 RNSGPLAFKPFEKISANKQTDLLQNKPEALLDLENRFLPKPSPKPSEFSSSVGSKQNLSM 562
Query: 200 SDNNLKKIGSEVKS 241
+++ + ++ KS
Sbjct: 563 DIPSVQNVSTKQKS 576
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 167 NWLRWARILVWTQICFGSLTF 105
NW WA+++V +CF LTF
Sbjct: 76 NWPLWAKLVVTFDVCF--LTF 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,233
Number of Sequences: 5004
Number of extensions: 53547
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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