Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f21f
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0778 + 19501208-19501328,19501447-19501637,19503150-195032...    28   5.6  
01_06_1736 + 39556376-39556523,39556651-39556745,39556867-395570...    28   5.6  

>04_03_0778 +
           19501208-19501328,19501447-19501637,19503150-19503237,
           19503362-19503416,19505280-19505391
          Length = 188

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 90  RKFLSKGK*TKTNLGPNQYSGPA 158
           ++FLSK K   T+LGP Q  GPA
Sbjct: 143 QRFLSKRKERLTSLGPYQVGGPA 165


>01_06_1736 +
           39556376-39556523,39556651-39556745,39556867-39557059,
           39557468-39557808,39558213-39558443,39558537-39558689
          Length = 386

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 630 RDILSFVQPSLIYYFLWFCCFTRLFIG 550
           RD++ FV    +YY  WF  F  L +G
Sbjct: 42  RDLMGFVFGRKMYYITWFLQFITLILG 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,715,016
Number of Sequences: 37544
Number of extensions: 250861
Number of successful extensions: 478
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)