Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f21f
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)                     30   1.9  
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_4126| Best HMM Match : DUF936 (HMM E-Value=5.4)                     28   5.8  
SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)                  28   5.8  

>SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)
          Length = 1387

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +2

Query: 281 KFNTYSNNI*EIGTRISLVKLPQGS*VLH*L*IDL*INYNK 403
           K NT+SNN+  IG  IS V + +    LH L  DL I+Y++
Sbjct: 427 KANTFSNNVDAIGNYISNVAITRDYKGLHQLLEDLSIDYSQ 467


>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -2

Query: 596 FTTFFGFAV--LRASLLAYIYIFIKTNYNIQESAFIYILL 483
           F++FFG  V  L A  +AY++IFI     IQ+   +++++
Sbjct: 190 FSSFFGIVVPPLCAMAVAYVHIFIVLRKQIQQIKKLHVIM 229


>SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 49  YFSEAIHKKKLSSNE-NSCPKVSEPKQIWVQTNIRAQRSQLYI 174
           Y SE + +++ +    N C KVS+ K +W+ ++   + SQ ++
Sbjct: 499 YLSELLQRQRYTRKRWNGCLKVSQLKSLWMTSSYMHKTSQKWM 541


>SB_4126| Best HMM Match : DUF936 (HMM E-Value=5.4)
          Length = 449

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 185 LKCRFSDNNLKKIGSEVKSVPSMPINYFGSKNKFNTYSNN 304
           L+C F    L  I  E+K   +   N  G +++F+T  NN
Sbjct: 348 LECSFDSITLPNINREIKPPGTQANNVGGKEHRFSTILNN 387


>SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)
          Length = 1451

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 49  YFSEAIHKKKLSSNE-NSCPKVSEPKQIWVQTNIRAQRSQLYI 174
           Y SE + +++ +    N C KVS+ K +W+ ++   + SQ ++
Sbjct: 499 YLSELLQRQRYTRKRWNGCLKVSQLKSLWMTSSYMHKTSQKWM 541


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,701,468
Number of Sequences: 59808
Number of extensions: 313507
Number of successful extensions: 654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)