Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f21f
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    29   3.8  
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    29   3.8  
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    29   3.8  
AL021497-6|CAA16408.1|  141|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z71186-7|CAM35835.1|  552|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL021497-5|CAA16399.1|  141|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 212 LKKIGSEVKSVPSMPINYFGSKNKFNTYSN 301
           +KKIG   K+VP +PI+ F   N     SN
Sbjct: 144 IKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 212 LKKIGSEVKSVPSMPINYFGSKNKFNTYSN 301
           +KKIG   K+VP +PI+ F   N     SN
Sbjct: 178 IKKIGYNPKAVPFVPISGFNGDNMLEVSSN 207


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 212 LKKIGSEVKSVPSMPINYFGSKNKFNTYSN 301
           +KKIG   K+VP +PI+ F   N     SN
Sbjct: 178 IKKIGYNPKAVPFVPISGFNGDNMLEVSSN 207


>AL021497-6|CAA16408.1|  141|Caenorhabditis elegans Hypothetical
           protein Y51A2D.10 protein.
          Length = 141

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 216 KKLGPK*NQFHQCQLIILGPKTNSIHI 296
           +K+ PK N +H+C  + L PK  +IH+
Sbjct: 80  RKIDPKINIYHRCNHVGLCPKRVTIHV 106


>Z71186-7|CAM35835.1|  552|Caenorhabditis elegans Hypothetical
           protein F23D12.10 protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 107 R*VNQNKFGSKPIFGPSEANY-IFGSKLKCRFSDNNLKKIGSEVKSVP 247
           R +N+N F  K +FG +E  Y     KL  R      KK+ SE  S P
Sbjct: 418 RTMNENLFSPKKVFGKNEYQYGPSMGKLIERMGTGTPKKVVSEYSSSP 465


>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 557 LLAYIYIFIKTNYNIQESAFIYILLYY*--C*VDIKLFSITIHFYFFFLNDIEFYC 396
           L  +++ FI + + +  +AF  I L Y   C   ++L   +I F+FFF + +E YC
Sbjct: 35  LFFFLFPFINSAFGLV-TAFHAIFLRYPNRCDFYLQLTCSSIGFFFFFSSLMETYC 89


>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 162 ASLGPNIGLDPNLFWFTYLWTRIFVRTQFFFVNGFTEILFL 40
           AS GP+I   P +FW   ++  I V      VNG+  +  L
Sbjct: 315 ASFGPHILKGPAVFWAIGVFFCIAVALSLLVVNGYKNVNLL 355


>AL021497-5|CAA16399.1|  141|Caenorhabditis elegans Hypothetical
           protein Y51A2D.9 protein.
          Length = 141

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 216 KKLGPK*NQFHQCQLIILGPKTNSIHI 296
           +K+ PK N +H+C    L PK  +IH+
Sbjct: 80  RKIDPKINIYHKCNYSGLCPKKVTIHV 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,007
Number of Sequences: 27780
Number of extensions: 281988
Number of successful extensions: 719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)