Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f21f
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.9  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 197 ICI*VWTQIYNWLRWARILVWTQI 126
           IC   W QIYN +R+  ++  T+I
Sbjct: 379 ICEHRWRQIYNMVRFRNLVKGTKI 402


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 603 SLIYYFLWFCCFTRLFIGLYLHI 535
           S I + + F CF  ++  +YLHI
Sbjct: 408 SRIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 603 SLIYYFLWFCCFTRLFIGLYLHI 535
           S I + + F CF  ++  +YLHI
Sbjct: 408 SRIVFPVCFVCFNLMYWIIYLHI 430


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 621 LSFVQPSLIYYFLWF 577
           LS + P+LI YF++F
Sbjct: 16  LSLLIPALILYFIYF 30


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 260 NYFGSKNKFNTYSNN 304
           NY  + N +N Y+NN
Sbjct: 329 NYNNNYNNYNNYNNN 343


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 431 YFFFLNDIEFYCSLFINLF 375
           Y  F + I FY  LF+ +F
Sbjct: 206 YLIFSSTISFYLPLFVMVF 224


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 194 RFSDNNLKKIGSEVKSVP 247
           RF+ N    I +EVKS+P
Sbjct: 145 RFNTNTEVVINTEVKSIP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,571
Number of Sequences: 438
Number of extensions: 4243
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)