Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f21f
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib...    29   2.7  
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib...    29   2.7  
At4g30310.1 68417.m04307 ribitol kinase, putative similar to rib...    29   2.7  
At5g03380.1 68418.m00291 heavy-metal-associated domain-containin...    29   3.6  
At2g37710.1 68415.m04624 lectin protein kinase, putative similar...    28   6.2  

>At4g30310.3 68417.m04309 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 451

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 103 PKVSEPKQIWVQTNIRAQRSQLYIWV 180
           P++  PK +WV+ N++   S +Y W+
Sbjct: 29  PEMEPPKLLWVKENLKESWSMVYKWM 54


>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 579

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 103 PKVSEPKQIWVQTNIRAQRSQLYIWV 180
           P++  PK +WV+ N++   S +Y W+
Sbjct: 147 PEMEPPKLLWVKENLKESWSMVYKWM 172


>At4g30310.1 68417.m04307 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 499

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 103 PKVSEPKQIWVQTNIRAQRSQLYIWV 180
           P++  PK +WV+ N++   S +Y W+
Sbjct: 147 PEMEPPKLLWVKENLKESWSMVYKWM 172


>At5g03380.1 68418.m00291 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP2
           [GI:4097545]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 392

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 152 PSEANYIFGSKLKCRFSDNNLKKIGSEVKSVPSMPIN 262
           P E+  +  +KL C   ++ +K+I +++K V S+ I+
Sbjct: 151 PKESTVVLKTKLHCEGCEHKIKRIVNKIKGVNSVAID 187


>At2g37710.1 68415.m04624 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 675

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = +2

Query: 155 SEANYIFGSKL----KCRFSDNNLKKIGSEV---KSVPSMPINYFGSKNKF 286
           +E N++F  +L       F+D N   +G ++   KSV S P  Y+  K +F
Sbjct: 134 NETNHVFAVELDTILSTEFNDTNDNHVGIDINSLKSVQSSPAGYWDEKGQF 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,375,838
Number of Sequences: 28952
Number of extensions: 242008
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)