Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f18r
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   4.1  
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)               29   5.5  
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)                 29   5.5  
SB_45254| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      28   9.5  
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)               28   9.5  

>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 290 IYLYSLILTCHMNTHTYTK*TDCKFCTNNKS 382
           +Y    +L  HM THT  K   CKFC  + S
Sbjct: 447 VYCRKYVLKIHMRTHTGFKPLKCKFCDKSFS 477


>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 928

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 311 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHA 421
           LTCH+  HT  +  +C++C    S  ++  ++  +H+
Sbjct: 522 LTCHIRIHTGERPYECRYCDKRFSQPSHRVQHEFKHS 558


>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 431

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 311 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 418
           LT HM THT  K   C+ C  N S  ++   ++  H
Sbjct: 320 LTRHMRTHTGQKPFQCRICMRNFSRSDHLTTHIRTH 355


>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 669

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 311 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 418
           LT HM THT  K   C+ C  N S  ++   ++  H
Sbjct: 558 LTRHMRTHTGQKPFQCRICMRNFSRSDHLTTHIRTH 593


>SB_45254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 656 QYKVT*QRLIYFALRSLKLLSVSHMFCGLL 567
           +Y +T +RL+ F+LR L +L   H  C LL
Sbjct: 84  RYVITTRRLVAFSLRQLFVLLSGHRRCNLL 113


>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 290 IYLYSLILTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHA 421
           +Y     L  HM  HT  K   CK+C       +N  K++  HA
Sbjct: 550 LYTRKYGLKIHMRIHTGYKPLKCKYCQKRFGDPSNMAKHIRLHA 593


>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 311 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 418
           L  HM THT  K   C FC+   S  +   +++ RH
Sbjct: 861 LKTHMRTHTGEKPYKCDFCSKLFSQHSTLMQHVQRH 896


>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
          Length = 487

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 311 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 418
           L CH+  HT      C+FC       N+ F +  RH
Sbjct: 71  LKCHLQHHTGELPYKCRFCDKRFGKSNSLFDHENRH 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,143,276
Number of Sequences: 59808
Number of extensions: 360734
Number of successful extensions: 847
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)