Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f18r
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defecti...    29   2.8  
U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defecti...    29   2.8  
U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachme...    28   8.4  
U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachme...    28   8.4  
AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defective
           protein 9, isoformd protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 320 HMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 418
           H + HT  K   CKFC  +     N  K++++H
Sbjct: 83  HRSVHTALKPYVCKFCGKSSRLKGNLTKHILKH 115


>U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defective
           protein 9, isoformc protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 320 HMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 418
           H + HT  K   CKFC  +     N  K++++H
Sbjct: 66  HRSVHTALKPYVCKFCGKSSRLKGNLTKHILKH 98


>U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform a protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 311 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHAT 424
           LT HM  HT  K   C  C  N +  ++   ++ RH+T
Sbjct: 271 LTRHMRKHTGDKPFRCSLCDRNFARSDHLSLHMKRHST 308


>U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform b protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 311 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHAT 424
           LT HM  HT  K   C  C  N +  ++   ++ RH+T
Sbjct: 277 LTRHMRKHTGDKPFRCSLCDRNFARSDHLSLHMKRHST 314


>AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical
           protein Y34B4A.5 protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
 Frame = -3

Query: 249 SQNDVYMSNLFS-DYSLYSLCWCNVGNNFL--NINH*LY*CQIK*C-QIISSYSTVNSY- 85
           S NDV MSN+FS   +  S C      N L    NH +Y  Q   C   +  +S+ NS  
Sbjct: 68  SNNDVCMSNIFSTKQTQISDCRATFAKNLLADYKNHCMYFEQYTGCFNALFDHSSCNSES 127

Query: 84  ----CTKARTCV*LIMRDVILVCISF 19
               C  AR     ++ D  L C +F
Sbjct: 128 SWWGCEYARQAGRAVLHDCSLQCSTF 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,844
Number of Sequences: 27780
Number of extensions: 287262
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)