Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f18f
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   3.6  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   4.8  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   6.3  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   8.4  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 255 LNAKYISLCQVTLYCNHFRLIPNRIVYI 172
           LNA Y SLC++  Y N F ++ N I  +
Sbjct: 140 LNASYKSLCKLYSYENSFIVVLNSIFVV 167


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 503 CTNNKSCDNNYFKYLIRH 450
           CT N  CD+N   YL+++
Sbjct: 99  CTRNTWCDDNRLNYLVKY 116


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 232 EADILCIKIIEAVECESYVLWFIDFLIQKDRKKNYNY 342
           E  +L I  ++  E ++   W+  + ++KD K  Y Y
Sbjct: 460 EKQVLRIFNVQIEELDAKTPWYYHYELEKDVKSTYEY 496


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 188 IGLFIFTSSIDPLMSIWPAAL 126
           +G FI TS  DP + +W  +L
Sbjct: 348 LGPFIITSGTDPYVRVWAPSL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,385
Number of Sequences: 5004
Number of extensions: 44585
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)