Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f18f
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.9
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 3.8
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 3.8
SB_45254| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.6
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29) 28 6.6
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_389| Best HMM Match : zf-C2H2 (HMM E-Value=1.8e-29) 27 8.7
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 578 IYLYSLILTCHMNTHTYTK*TDCKFCTNNKS 486
+Y +L HM THT K CKFC + S
Sbjct: 447 VYCRKYVLKIHMRTHTGFKPLKCKFCDKSFS 477
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 557 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHA 447
LTCH+ HT + +C++C S ++ ++ +H+
Sbjct: 522 LTCHIRIHTGERPYECRYCDKRFSQPSHRVQHEFKHS 558
>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 431
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 557 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 450
LT HM THT K C+ C N S ++ ++ H
Sbjct: 320 LTRHMRTHTGQKPFQCRICMRNFSRSDHLTTHIRTH 355
>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 669
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 557 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 450
LT HM THT K C+ C N S ++ ++ H
Sbjct: 558 LTRHMRTHTGQKPFQCRICMRNFSRSDHLTTHIRTH 593
>SB_45254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 212 QYKVT*QRLIYFALRSLKLLSVSHMFCGLL 301
+Y +T +RL+ F+LR L +L H C LL
Sbjct: 84 RYVITTRRLVAFSLRQLFVLLSGHRRCNLL 113
>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 578 IYLYSLILTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHA 447
+Y L HM HT K CK+C +N K++ HA
Sbjct: 550 LYTRKYGLKIHMRIHTGYKPLKCKYCQKRFGDPSNMAKHIRLHA 593
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 557 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 450
L HM THT K C FC+ S + +++ RH
Sbjct: 861 LKTHMRTHTGEKPYKCDFCSKLFSQHSTLMQHVQRH 896
>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
Length = 487
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 557 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 450
L CH+ HT C+FC N+ F + RH
Sbjct: 71 LKCHLQHHTGELPYKCRFCDKRFGKSNSLFDHENRH 106
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +1
Query: 97 DELPVNYIPDNAAGQIDIKGSIDEVNI--NNPIGNQSEVIA-IQGYLTEADILC--IKII 261
++LP +YIP ++ G++ +NI I VI ++ LT+ ++ I+
Sbjct: 4849 EKLPPDYIPHEVKSRLQKMGALTSMNIFLRQEIDRMQRVITLVRHTLTDLNLAIEGTIIM 4908
Query: 262 EAVECESYVL--WFIDFL 309
+ ES L WF +FL
Sbjct: 4909 SEISWESSTLGFWFTEFL 4926
>SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +1
Query: 97 DELPVNYIPDNAAGQIDIKGSIDEVNI--NNPIGNQSEVIA-IQGYLTEADILC--IKII 261
++LP +YIP ++ G++ +NI I VI ++ LT+ ++ I+
Sbjct: 43 EKLPPDYIPHEVKSRLQKMGALTSMNIFLRQEIDRMQRVITLVRHTLTDLNLAIEGTIIM 102
Query: 262 EAVECESYVL--WFIDFL 309
+ ES L WF +FL
Sbjct: 103 SEISWESSTLGFWFTEFL 120
>SB_389| Best HMM Match : zf-C2H2 (HMM E-Value=1.8e-29)
Length = 383
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 575 YLYSLILTCHMNTHTYTK*TDCKFCTNNKSC 483
+ ++ L H THT K +CK C+ + SC
Sbjct: 328 FTQAVTLRSHTRTHTGAKPYNCKRCSKSFSC 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,423
Number of Sequences: 59808
Number of extensions: 301637
Number of successful extensions: 659
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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