Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f18f
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    34   0.088
U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defecti...    29   1.9  
U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defecti...    29   1.9  
Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachme...    28   5.8  
U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachme...    28   5.8  

>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 180 VYIYFINRSFNVNLACSIVRNVIYW*FI 97
           +Y++FIN  FNV L   +V N I+W F+
Sbjct: 190 IYVFFINNWFNVKLDNFLVPNAIFWLFL 217


>U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defective
           protein 9, isoformd protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 548 HMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 450
           H + HT  K   CKFC  +     N  K++++H
Sbjct: 83  HRSVHTALKPYVCKFCGKSSRLKGNLTKHILKH 115


>U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defective
           protein 9, isoformc protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 548 HMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 450
           H + HT  K   CKFC  +     N  K++++H
Sbjct: 66  HRSVHTALKPYVCKFCGKSSRLKGNLTKHILKH 98


>Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.8 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 27/96 (28%), Positives = 41/96 (42%)
 Frame = -3

Query: 342 IVIIFFPILLDEEVNKPQNI*LTLNSFNDLNAKYISLCQVTLYCNHFRLIPNRIVYIYFI 163
           I++  F I+L  E+ K + +  T  SF + N+K  S   VT     F L    +  +Y I
Sbjct: 224 ILLPLFTIVLLYEMKKTRKV-ATSRSFQNSNSKDRSTKLVTFVTITFLLSTVPLGILYII 282

Query: 162 NRSFNVNLACSIVRNVIYW*FILLL*YGHNYLILIC 55
              F  +L  S   N +   F+L+         LIC
Sbjct: 283 KSIFLQSLVISNFANKLQSIFVLISIINGTLHFLIC 318


>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
           protein F56D5.9 protein.
          Length = 1132

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 222 TLYCNHFRLIPNRIVYIY-FINRSFNVNLACSI-VRNVIYW*FILLL*YGHNYLILICAL 49
           T Y    +     + ++  F++  F +    +I ++N I W FI+L+ +G   L +I  +
Sbjct: 689 TYYHKELKAASESVTFLNKFLDELFEMGRHETIWIQNSIPWYFIVLIIFGSLVLFIILLI 748

Query: 48  LIYSPFVPN 22
           ++YS   PN
Sbjct: 749 ILYS-ITPN 756


>U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform a protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 557 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHAT 444
           LT HM  HT  K   C  C  N +  ++   ++ RH+T
Sbjct: 271 LTRHMRKHTGDKPFRCSLCDRNFARSDHLSLHMKRHST 308


>U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform b protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 557 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHAT 444
           LT HM  HT  K   C  C  N +  ++   ++ RH+T
Sbjct: 277 LTRHMRKHTGDKPFRCSLCDRNFARSDHLSLHMKRHST 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,093,228
Number of Sequences: 27780
Number of extensions: 239364
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)