Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f18f
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.24 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.32 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 557 LTCHMNTHTYTK*TDCKFCTNNKSCDNN 474
           LT H  THT  K   C++C+ + S   N
Sbjct: 107 LTRHYRTHTGEKPYQCEYCSKSFSVKEN 134



 Score = 25.4 bits (53), Expect = 0.43
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 575 YLYSLILTCHMNTHTYTK*TDCKFCTNNKSC 483
           ++ S  L  HM THT  K   CK C    +C
Sbjct: 185 FIQSGQLVIHMRTHTGEKPYVCKACGKGFTC 215


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 518 TDCKFCTNNKSCDNNYFKYLIRHA 447
           T+C FC NN   +  Y K+L++ A
Sbjct: 38  TECVFCRNNGEEEAYYRKHLLKDA 61


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 115 YIPDNAAGQIDIKGSIDEVNINNPIGNQSEVIAIQGYLT 231
           ++PD  AG  +I G   +       G     IA+ GY T
Sbjct: 235 FMPDPLAGDYNIGGLNFQWGEEGIFGMSLSPIAVNGYRT 273


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 160 IDEVNI-NNPIGNQSEVIAIQGYLTEADIL 246
           +D  N+   P+GN+SE + +   LT   I+
Sbjct: 32  LDTYNVLERPVGNESEPLVLSFGLTLMQII 61


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 286 VLWFIDFLIQKDRKKNYNYLTSCLLIDYP 372
           + W     ++ D +  ++YL +C   D+P
Sbjct: 13  LFWQNSASLENDNEFGFSYLLNCKNYDHP 41


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = +1

Query: 157 SIDEVNINNPIGNQSEVIAIQGYLTEADILCIKIIEAVEC 276
           S+D  N N+   +    + +  + +  +I  +KI E  +C
Sbjct: 364 SLDNTNTNDQDYSSQNYLTVHSFPSTLNIPSVKIDEDQKC 403


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 596 IYYFVFIYLYSLI 558
           I YF+F+Y  SL+
Sbjct: 19  INYFIFLYFNSLV 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,895
Number of Sequences: 438
Number of extensions: 3383
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)