Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f18f
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11230.1 68416.m01366 yippee family protein similar to qdgl-1...    30   1.3  
At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1...    28   5.4  
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR...    27   9.5  
At3g49280.1 68416.m05386 hypothetical protein                          27   9.5  

>At3g11230.1 68416.m01366 yippee family protein similar to qdgl-1
           [Coturnix coturnix] GI:10441650, Yippee protein [Homo
           sapiens] GI:5713281; contains Pfam profile PF03226:
           Yippee putative zinc-binding protein
          Length = 129

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 175 INNPIGNQSEVIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLIQKDRK 327
           +N   G + + + + G  T  DI C+K      C SYV W  +F  +K++K
Sbjct: 48  VNVYAGKKEDRMMMTGMHTVVDIYCVK------CGSYVGWKYEFAFEKNQK 92


>At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1
           [Coturnix coturnix] GI:10441650, Yippee protein
           [Drosophila melanogaster] GI:5713279; contains Pfam
           profile PF03226: Yippee putative zinc-binding protein
          Length = 128

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 175 INNPIGNQSEVIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLIQKDRK 327
           +N  +G +   + I G+ T ADI C      V C S V W  +    K +K
Sbjct: 48  VNVTVGEKEHRVMITGWHTVADIFC------VSCGSLVGWKYEIAYDKSQK 92


>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1261

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 237 SLCQVTLYCNHFRLIPNRIVYIYFIN 160
           S+ +++L  N FR++P  I Y+Y +N
Sbjct: 872 SVRRLSLSSNEFRILPRSIGYLYHLN 897


>At3g49280.1 68416.m05386 hypothetical protein
          Length = 176

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 271 ECESY-VLWFIDFLIQKDR--KKNYNYLTSCLLIDYP 372
           E + Y  +WF D    K+R  K N N  TSCLL +YP
Sbjct: 42  EMQDYKAIWFSD-ATPKERMLKWNKNVGTSCLLCNYP 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,930,296
Number of Sequences: 28952
Number of extensions: 202495
Number of successful extensions: 409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)