BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10f17r (778 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013) 51 9e-07 SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15) 37 0.016 SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028 SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 34 0.15 SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 33 0.26 SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26 SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60 SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60 SB_39378| Best HMM Match : VWA (HMM E-Value=0) 32 0.60 SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08) 31 0.79 SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79 SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 31 1.4 SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 31 1.4 SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 30 1.8 SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 30 1.8 SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8 SB_25813| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4 SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4 SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018) 30 2.4 SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5) 30 2.4 SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2 SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2 SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) 29 4.2 SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40) 29 5.5 SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 29 5.5 SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5 SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22) 29 5.5 SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0) 28 7.3 SB_38454| Best HMM Match : DCX (HMM E-Value=4.2) 28 7.3 SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06) 28 7.3 SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 7.3 SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 28 7.3 SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 7.3 SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07) 28 7.3 SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3 SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3 SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7 SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7 SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 28 9.7 SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7 SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7 SB_11762| Best HMM Match : 4HBT (HMM E-Value=1.6e-19) 28 9.7 SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7 >SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013) Length = 185 Score = 51.2 bits (117), Expect = 9e-07 Identities = 30/83 (36%), Positives = 41/83 (49%) Frame = -3 Query: 551 GVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEAT 372 G G F GLA YL S EI ++ E Y + Y K G +A LD + Sbjct: 69 GSLGQLMFFGGLAAYLLSNEILIIHEETYIAAVMGGTFYWLMKKAGGPIAEMLDNTSQEI 128 Query: 371 ENEWNEGRNQTVKALEDAIEGEK 303 + +N GRN ++K L+DAI+ EK Sbjct: 129 LDAFNVGRNASIKHLQDAIDNEK 151 >SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15) Length = 979 Score = 37.1 bits (82), Expect = 0.016 Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Frame = -2 Query: 327 GGRNRGREDGAVARAGT-GAPHPGQEGERAPAARGRLQ-GEAHVRLLRGEAASGLPAREV 154 G + E G + AG G G E +A A ++ GEA GEA A E Sbjct: 631 GETSEAGEAGEASEAGVAGEAVEGSEASKAGEAGEAVEAGEASEA---GEAIEAGEAGEA 687 Query: 153 ERGAPSRPEAHGRLD--SEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVNGSE 4 + + EA G SE + G+ S GEAG G AG+ V GSE Sbjct: 688 SEASEAAGEATGEAGEASEASEAGEASEAGEAGEAGEASEAGVAGEAVEGSE 739 Score = 30.7 bits (66), Expect = 1.4 Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Frame = -2 Query: 327 GGRNRGREDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREV 154 G E G + AG GA + GE + A GEA GEA A E Sbjct: 846 GEAGEAGEAGEASEAGEAGGASEASEAGEASEAGEASKAGEASKASEAGEAGEASEAGEA 905 Query: 153 ERGAPSRPEAHGRLDS-EQRDQGDHSGPGEA 64 A EA G ++ E + G+ S GEA Sbjct: 906 SE-AGEASEAGGASEAGEASEAGEASEAGEA 935 >SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1853 Score = 36.3 bits (80), Expect = 0.028 Identities = 27/96 (28%), Positives = 38/96 (39%) Frame = -2 Query: 306 EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPE 127 EDGA+ G P G+ G+ PA R L G+ + G P + E G Sbjct: 689 EDGAIGSRGLPGPS-GEPGKPGPAGRAGLAGQ--------DGLPGTPGTKGEPGPTGEKG 739 Query: 126 AHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQE 19 R+ E+ +G G G GP L G G++ Sbjct: 740 EVFRIKGEKGAKGQQGGIGNPGPPGLRGDVGPPGEQ 775 Score = 36.3 bits (80), Expect = 0.028 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Frame = -2 Query: 264 PGQEGERAPAARGRLQG----EAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQR 97 PG G R PA R + G + L + +G+P + G P P A G L E Sbjct: 1108 PGPAGPRGPAGRNGIDGLPGTKGEPGSLGEKGDAGIPGQRGLTGNPGLPGAQG-LKGEPG 1166 Query: 96 DQGDHSGPGEAG-PGP 52 G + PG G PGP Sbjct: 1167 RDGQNGSPGRKGEPGP 1182 Score = 32.3 bits (70), Expect = 0.45 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 4/108 (3%) Frame = -2 Query: 312 GREDGAVARAGTGAPH-PGQEGERAPAARGRLQGEAHVRLLRGEAAS-GLPAREVERGA- 142 GR A + TG P PG +GE+ A + G R +G+ GL G Sbjct: 1319 GRAGQAGPKGETGLPGMPGLDGEKGSAGVPGIPGGPGGRGFKGDQGPPGLNGNPGAPGVD 1378 Query: 141 -PSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVNGSER 1 P+ P+ + +G+ PG GP PG +G + +R Sbjct: 1379 GPTGPKGESGIAGLDGPKGEPGLPGRDGPAGEKGSPGLSGLRGDKGDR 1426 Score = 29.5 bits (63), Expect = 3.2 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Frame = -2 Query: 327 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRG-EAASGLPAREVE 151 GGR + G G PG +G P +GE+ + L G + GLP R+ Sbjct: 1355 GGRGFKGDQGPPGLNGNPGA-PGVDGPTGP------KGESGIAGLDGPKGEPGLPGRDGP 1407 Query: 150 RGAPSRPEAHGRLDSEQRDQGDHSGPGEAGP 58 G P G + D+GD PG +GP Sbjct: 1408 AGEKGSPGLSGL----RGDKGDRGLPGPSGP 1434 Score = 27.9 bits (59), Expect = 9.7 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Frame = -2 Query: 327 GGRNRGREDGAVARAGTGAP----HPGQEGERAPAARGRLQGEAHVRLLRGEAAS-GLPA 163 G G + + GAP PG++GE+ R L G + +GE G Sbjct: 346 GSGGSGCNGTTIFKGPPGAPGEKGEPGKQGEKGEEGRPGLPGAQGIEGPKGERGEPGNQG 405 Query: 162 REVERGAPSRPEAHGRLDSEQR 97 + +RG P G L S+ R Sbjct: 406 LKGDRGVDGNPGPIGPLVSKDR 427 >SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) Length = 311 Score = 33.9 bits (74), Expect = 0.15 Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 7/111 (6%) Frame = -2 Query: 345 PNRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRG-EAASGL 169 P R+ G+ RG E + G+G G +G P QG R G + SG Sbjct: 87 PGRQGLQGK-RGPEGDPGSPGGSG--EAGDKGVDGPPGSPGPQGFNGARGPNGPKGDSGR 143 Query: 168 PAREVERGAPSRPEAHGRLDSEQ------RDQGDHSGPGEAGPGPLHRGPG 34 P ++ +G P P A G + G + GP GPGP GPG Sbjct: 144 PGQDGRQGPPGPPGARGEPGQQAPMMIQVSRPGPNKGPPGPGPGP---GPG 191 >SB_36009| Best HMM Match : Collagen (HMM E-Value=0) Length = 687 Score = 33.1 bits (72), Expect = 0.26 Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 4/90 (4%) Frame = -2 Query: 276 GAP-HPGQEGERAPAARGRLQGEAHVRLLRGE-AASGLPAREVERGAPSRPEAHGRLDSE 103 GAP PG G++ G LRG A G E GAP R A G Sbjct: 379 GAPGSPGLGGQKGDQGMPGKPGNPGAAGLRGAPGARGDYGERGEPGAPGRDGAPGAQGER 438 Query: 102 --QRDQGDHSGPGEAGPGPLHRGPGFAGQE 19 + +QG G AG G PG G++ Sbjct: 439 GPRGEQGKQGEKGHAGEGGADGAPGIPGEQ 468 Score = 31.9 bits (69), Expect = 0.60 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Frame = -2 Query: 306 EDGAVARAGTGAPHPGQEGERAPAARGRLQGE-AHVRLLRGEAASGLPAREVERGAPSRP 130 E GA R G PG +GER P QGE H + A G+P + G P Sbjct: 422 EPGAPGRDGA----PGAQGERGPRGEQGKQGEKGHAGEGGADGAPGIPGEQGPMGPVGAP 477 Query: 129 EAHGRLDSEQRDQGDHSGPGEAGP 58 G + G PG +GP Sbjct: 478 GPVG-------NAGSPGSPGPSGP 494 Score = 29.1 bits (62), Expect = 4.2 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Frame = -2 Query: 198 LLRGEAASGLPAREVERGAPSR---PEAHGR-----LDSEQRDQGDHSGPGEAGPGPLHR 43 ++R GLP + +RG P P G + D GD PGEAGP + Sbjct: 113 VIRRVGIPGLPGKRGDRGTPGAKGPPGLAGEPGEPGTQGPRGDPGDVGEPGEAGPSGRNG 172 Query: 42 GPGFAG 25 G AG Sbjct: 173 ANGTAG 178 >SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 333 Score = 33.1 bits (72), Expect = 0.26 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +3 Query: 471 FVLHYIDFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFA 611 +VL+ IDF A C HT + H +F+VE F R KS F+ Sbjct: 21 YVLNSIDFEA----CDKHTIGIAYAHAAFKVEAATKFTREPLKSGFS 63 >SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4072 Score = 31.9 bits (69), Expect = 0.60 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 9/117 (7%) Frame = -2 Query: 342 NRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGE------- 184 N + G + G + + G + G+ P G L G+A +R L+G Sbjct: 3714 NTGAPGSQGSTGPRGPIGQPGMAGSQGEKGGKGDPGFPG-LPGQAGLRGLQGPEGQKGSI 3772 Query: 183 AASGLPAREVERGAPSRPEA-HGRLDSEQRDQGDHSGPGEAG-PGPLHRGPGFAGQE 19 A G+P + E+G P RP G R + PG G PG + PG G + Sbjct: 3773 GAPGIPGKIGEKGVPGRPSTIAGPPGPPGRSKNISGPPGPQGPPGQASQIPGPPGPQ 3829 >SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 547 Score = 31.9 bits (69), Expect = 0.60 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 5/106 (4%) Frame = -2 Query: 339 RESTGGRN-RGRED--GAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 169 R +TG R GR G ++G PG+ G P A+G + + L + A G Sbjct: 216 RGATGPRGYTGRTGLRGVPGKSGRNGT-PGKNGR--PGAKGAMGPRGYRGLTGSKGARGA 272 Query: 168 PAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLH--RGP 37 ++ RGA RP +G + +G G GP L RGP Sbjct: 273 RGKQGLRGATGRPGRNG-VPGRPGSKGKTGARGATGPRGLRGLRGP 317 >SB_39378| Best HMM Match : VWA (HMM E-Value=0) Length = 2865 Score = 31.9 bits (69), Expect = 0.60 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 2/167 (1%) Frame = -3 Query: 596 GFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKF 417 GF+ E++F SK+ +G+A+Y S I+ + Y +G + + Sbjct: 2183 GFLREKYFVIGISKSFEISANKTRIGVASYSSSANIHFNFNTYNTGYDVENAINAISFSG 2242 Query: 416 GPK--LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENV 243 G K LA LD E N + + + + AL +G T++ Q L+ +K Sbjct: 2243 GAKRNLARGLDATFEGLFN-FTDIQPSDINALIVLTDGRATDEIDMAAQRLV--NEKNVT 2299 Query: 242 LLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVS 102 ++ + A RL +E++R E + RR+ Q ++ +++ Sbjct: 2300 IIAVGAGSHVRL----AELRRLAGLASESPLITRRVIQADSMEELIN 2342 >SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08) Length = 277 Score = 31.5 bits (68), Expect = 0.79 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Frame = -3 Query: 395 LDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYR 216 L K +E T+ E +E + ALE+AIE +K+ + EL I+ + + +E R Sbjct: 90 LCKTLEVTDRESDEKMRELEDALEEAIELDKSTADKLAEVELKIKVVQGELEKAVERGDR 149 Query: 215 ERLMYAY--------SEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQ 63 +M + SEV R L+ + + + ER + + +++I N+ + + +E + Sbjct: 150 AEMMCEHLMNDFTGTSEVLRDLEVK-DAAASEREIDNEDKIEFIQENLKQMVYRYEEAE 207 >SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 740 Score = 31.5 bits (68), Expect = 0.79 Identities = 17/75 (22%), Positives = 32/75 (42%) Frame = -2 Query: 777 LEITYKYTINNVVARGFAFRCEQTDRVHSTSRTGLRLRCSNTRPENLCSPCKG*ARQS*T 598 L + Y + + G+ R + ++ G+R +C N ++C C+ R + T Sbjct: 89 LNVLYCIAEDQAIKEGYIHRGITCNTCQASPICGVRYKCGNCVDYDICERCESQDRHNST 148 Query: 597 WLYS*RMVPILPLEN 553 + +PI PL N Sbjct: 149 HAFIKIRIPIPPLAN 163 >SB_59302| Best HMM Match : Collagen (HMM E-Value=0) Length = 993 Score = 30.7 bits (66), Expect = 1.4 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = -2 Query: 174 GLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVN 13 G P ++ G P P A G + G PGEAGP GPG+ G N Sbjct: 456 GPPGPQMPPGPPGLPGAPGP-NGPPGINGPLGPPGEAGPPGNPGGPGYQGNHGN 508 Score = 30.7 bits (66), Expect = 1.4 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = -2 Query: 174 GLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVN 13 G P ++ G P P A G + G PGEAGP GPG+ G N Sbjct: 541 GPPGPQMPPGPPGLPGAPGP-NGPPGINGPLGPPGEAGPPGNPGGPGYQGNHGN 593 Score = 27.9 bits (59), Expect = 9.7 Identities = 17/54 (31%), Positives = 21/54 (38%) Frame = -2 Query: 174 GLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVN 13 G P ++ G P P A G G PG+ GP GPG+ G N Sbjct: 286 GPPGPQMPPGPPGLPGAPGP-KGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHGN 338 Score = 27.9 bits (59), Expect = 9.7 Identities = 17/54 (31%), Positives = 21/54 (38%) Frame = -2 Query: 174 GLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVN 13 G P ++ G P P A G G PG+ GP GPG+ G N Sbjct: 371 GPPGPQMPPGPPGLPGAPGP-KGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHGN 423 >SB_25350| Best HMM Match : Collagen (HMM E-Value=0) Length = 1112 Score = 30.7 bits (66), Expect = 1.4 Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Frame = -2 Query: 276 GAP-HPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQ 100 GAP PG EG+ + +G L+G G P E RG P P G+ + Sbjct: 141 GAPGSPGAEGKVGLTGQTGPRGPTGPPGLQG--VRGAPGNEGARGLPGNPGLKGKRGA-- 196 Query: 99 RDQGDHSGPGEAGP-GPLHRGP-GFAGQ 22 G PG GP GP GP G GQ Sbjct: 197 --TGSRGSPGNQGPQGP--SGPQGSKGQ 220 >SB_6496| Best HMM Match : Collagen (HMM E-Value=0) Length = 1234 Score = 30.3 bits (65), Expect = 1.8 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Frame = -2 Query: 261 GQEGERAPAARGRLQGEAHVRLLRGEAAS-GLPAREVERGAPSRPEAHGRLDSEQRDQGD 85 G++GE P G VR +GE+ S GLP +G G + + ++G Sbjct: 92 GKDGEEGPPGPNGAPGRPGVRGPKGESGSRGLPGNHGVQGERGSQGGRG-IKGGRGNEGS 150 Query: 84 HSGPGEAG--PGPLHRGP 37 PG AG G RGP Sbjct: 151 AGIPGRAGNKGGRGDRGP 168 >SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) Length = 182 Score = 30.3 bits (65), Expect = 1.8 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -2 Query: 192 RGEAAS-GLPAREVERGAPSRPEAHGR--LDSEQRDQGDHSGPGEAGPGPLHRGPG 34 +GE + G R RG P +P A G+ + +GD G+AGP L PG Sbjct: 34 KGEKGNRGRRGRRGPRGPPGKPGADGKPGIRGPPGPKGDKGEKGDAGPRGLKGDPG 89 >SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 964 Score = 30.3 bits (65), Expect = 1.8 Identities = 28/103 (27%), Positives = 33/103 (32%) Frame = -2 Query: 327 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVER 148 GG+ G+ + G G P PG P G QG G+ P + Sbjct: 486 GGQGWGQPPPGAGQGG-GPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQG 544 Query: 147 GAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQE 19 G P P A G GP G G P AGQE Sbjct: 545 GGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQE 587 >SB_25813| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 233 Score = 29.9 bits (64), Expect = 2.4 Identities = 18/70 (25%), Positives = 31/70 (44%) Frame = -2 Query: 267 HPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQG 88 HP E E+ P A + + E H + A P E + A +PEA + ++E++ + Sbjct: 49 HP--EAEKQPEAEKQPEAEKHPEAEKHPEAEKQPEAEKQPEAEKQPEAEKQPEAEKQPEA 106 Query: 87 DHSGPGEAGP 58 + E P Sbjct: 107 EKHPEAEKQP 116 Score = 29.1 bits (62), Expect = 4.2 Identities = 18/70 (25%), Positives = 29/70 (41%) Frame = -2 Query: 267 HPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQG 88 HP E E+ P A + + E H + A P E A PEA + ++E++ + Sbjct: 31 HP--EAEKQPEAEKQPEAEKHPEAEKQPEAEKQPEAEKHPEAEKHPEAEKQPEAEKQPEA 88 Query: 87 DHSGPGEAGP 58 + E P Sbjct: 89 EKQPEAEKQP 98 Score = 28.7 bits (61), Expect = 5.5 Identities = 16/66 (24%), Positives = 27/66 (40%) Frame = -2 Query: 255 EGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSG 76 E E+ P A + E H + A P E + A +PEA + ++E+ + + Sbjct: 57 EAEKQPEAEKHPEAEKHPEAEKQPEAEKQPEAEKQPEAEKQPEAEKQPEAEKHPEAEKQP 116 Query: 75 PGEAGP 58 E P Sbjct: 117 EAEKHP 122 Score = 28.3 bits (60), Expect = 7.3 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = -2 Query: 255 EGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD-HS 79 E E+ P A + + E H + A P E A PEA ++E+ + + H Sbjct: 105 EAEKHPEAEKQPEAEKHPEAEKHPEAEKHPEAEKHPEAQKHPEAEKHPEAEKHPEAEKHP 164 Query: 78 GPGEAGPGPLHRGP 37 EA G L GP Sbjct: 165 EAKEATLGLLLFGP 178 >SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2672 Score = 29.9 bits (64), Expect = 2.4 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%) Frame = -3 Query: 395 LDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQ--GQELLIQAKKENV-----LL 237 L++E+E+ + E E R + VKA E E+ EQ++A+ ++ IQA + + L Sbjct: 1543 LEEEIESKDAEAEEERTRIVKAAE-GFALEREEQFKAELADKDDCIQATENELNQVKHQL 1601 Query: 236 QLEAAYRERLMYAYSEVKRRLDYQLE 159 QL ++ L+ A E R L++ E Sbjct: 1602 QLAQEAKKTLLEASDERDRELEHLKE 1627 >SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018) Length = 482 Score = 29.9 bits (64), Expect = 2.4 Identities = 17/65 (26%), Positives = 29/65 (44%) Frame = -3 Query: 215 ERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIADL 36 E M+A +V ++ +EKS A + W VS P+ E +D + D+ Sbjct: 281 EATMFALEDVIQKYSNSIEKSMGTGASAARRQ--WAVSEEENTAAPNAEAANVDSAVRDM 338 Query: 35 ASLAR 21 A +A+ Sbjct: 339 AGMAK 343 >SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5) Length = 208 Score = 29.9 bits (64), Expect = 2.4 Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 10/118 (8%) Frame = -2 Query: 324 GRNRGREDGAVARAG--TGAPHPGQEGERAPAAR----GRLQGEAHVRLLRGEAASGLPA 163 GR R + G +A +G G+ G A + R GR+ G H+ A SG A Sbjct: 27 GRGRMADSGGMAGSGHMAGSGRMAGSGRMAGSGRMAGTGRMAGSGHMAGSGRMAGSGRMA 86 Query: 162 REVERGAPSRPEAHGRLDSEQR--DQGDHSGPGE-AGPGPLHRGPGFAGQ-EVNGSER 1 R GR+ R D G +G G AG G + AG + GS R Sbjct: 87 GSGRMAGSGRMAGSGRMAGSGRMADSGRMAGSGRMAGSGRMAGSGRMAGSGRMAGSGR 144 >SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1572 Score = 29.5 bits (63), Expect = 3.2 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 12/95 (12%) Frame = -2 Query: 324 GRNRG----REDGAVARAGTGAP-----HPGQEGERAPAARGRLQGEAHVRLLRGEAASG 172 G+ RG ++ G + R+G +P P +P ARGR +G V GE SG Sbjct: 1141 GKGRGEVGSKQRGGLGRSGDKSPVRMEQEPPPRSAASPPARGR-RGRKRV----GEDISG 1195 Query: 171 LPA---REVERGAPSRPEAHGRLDSEQRDQGDHSG 76 +E+E+ PS+ A+ + S + D G Sbjct: 1196 NEQSLEKEIEKEEPSQSSANSKSPSPEHQAADREG 1230 >SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 673 Score = 29.5 bits (63), Expect = 3.2 Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 11/67 (16%) Frame = -2 Query: 309 REDGAVARAGT-GA--PHPGQEGERAPAARG-RLQGEAH-------VRLLRGEAASGLPA 163 RE A R+GT GA +PG+ G+RA RG R QG A VR R SG P Sbjct: 325 REPRASRRSGTHGARCENPGRRGDRAHRERGARTQGVAEIGHAWSAVREPRASRRSGTPH 384 Query: 162 REVERGA 142 +E GA Sbjct: 385 WNLEGGA 391 >SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3486 Score = 29.1 bits (62), Expect = 4.2 Identities = 18/68 (26%), Positives = 25/68 (36%) Frame = -2 Query: 324 GRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERG 145 GRN GR R+G R+ GR++ AH + G L R +G Sbjct: 1767 GRNSGRMKSLAHRSGRNGGRMKSLANRSGRNGGRMKSLAHRSMRNGGRMKSLAHRSSRKG 1826 Query: 144 APSRPEAH 121 + AH Sbjct: 1827 GRMKSLAH 1834 >SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 313 Score = 29.1 bits (62), Expect = 4.2 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = -2 Query: 315 RGREDGAVARAGTGAPHPGQEGERAPAARG 226 RG E AGT A H G G APA G Sbjct: 204 RGYEQKTPESAGTSARHSGASGREAPAEAG 233 >SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) Length = 444 Score = 29.1 bits (62), Expect = 4.2 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -2 Query: 723 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 631 +RC TD H T T +R T P+ LC+ Sbjct: 2 YRCHTTDCAHCTDFTRQTVRTVQTPPDRLCA 32 Score = 27.9 bits (59), Expect = 9.7 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 723 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 631 +R QTD H T T LR T P+ LC+ Sbjct: 194 YRHHQTDCAHCTDFTRQTLRIVQTPPDRLCA 224 >SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40) Length = 351 Score = 28.7 bits (61), Expect = 5.5 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +1 Query: 403 ANFGPNFT*ATYTMTSSDSPE*YS 474 ANFGP FT T+T TS D+ E +S Sbjct: 89 ANFGPGFT--TFTYTSGDARETFS 110 >SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) Length = 889 Score = 28.7 bits (61), Expect = 5.5 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Frame = -3 Query: 365 EWNEGRNQTVKALEDAIEGEKTE--QWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYS 192 EW + L D ++ TE + +AQ ELL+Q +K +++E RE+L Sbjct: 176 EWGRAATKWDSTL-DQVDSVMTELSKVKAQRDELLLQIEKSEDSIKMEIDSREKL----- 229 Query: 191 EVKRRLDYQLEKSNVERRLAQKHMVD 114 L+ QL+K+ E AQ+ ++ Sbjct: 230 -----LEQQLQKTQTELAKAQQRCLE 250 >SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1040 Score = 28.7 bits (61), Expect = 5.5 Identities = 27/95 (28%), Positives = 42/95 (44%) Frame = -3 Query: 410 KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL 231 KL+ L KE TE NE + KALE I + + ++G +QAK ++ L Sbjct: 501 KLSISLKKEFSVTEE--NERLLREKKALESRILDAEEQVSSSKGMITALQAKLDDALNSR 558 Query: 230 EAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQK 126 EA Y ++ D + +VE LA++ Sbjct: 559 EAKSDWDSNRIYELEEKIKDLSKKLKDVESDLAER 593 >SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22) Length = 350 Score = 28.7 bits (61), Expect = 5.5 Identities = 14/73 (19%), Positives = 35/73 (47%) Frame = -3 Query: 428 HVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKE 249 H + P+L W++ + + E + + + + +A E + E+ R Q +E + +E Sbjct: 61 HRECSPELKPWMEAQQKEMEEKLRLKKEEEERIQREAEEAAERERLRIQAEEEARRKAEE 120 Query: 248 NVLLQLEAAYRER 210 +++E R++ Sbjct: 121 EERIRIEEIKRQQ 133 >SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0) Length = 1596 Score = 28.3 bits (60), Expect = 7.3 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Frame = -2 Query: 306 EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPE 127 E G + A A G+ E + A + GEA + GEA+ A E + + Sbjct: 156 ETGEASEATGEASEAGEASEASKAGKASEAGEAGEAVEAGEASKAGRASEAGEASEAGKA 215 Query: 126 AHGRLDSEQRDQGDHSG-PGEAGPGPLHRGPGFAGQEVNGSE 4 + SE + + +G EAG AG+ V E Sbjct: 216 SEASEASETGEASEATGEASEAGEASKAGKASEAGEAVEAGE 257 >SB_38454| Best HMM Match : DCX (HMM E-Value=4.2) Length = 239 Score = 28.3 bits (60), Expect = 7.3 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -2 Query: 165 AREVERGAPSRPE-AHGRLDSEQRDQGDHSGPGEAGPGPLH 46 A+ + + P+R + +HGR +S++ D+ S G GP+H Sbjct: 69 AKNLSKTTPNRTKPSHGRKNSDRSDRKMSSTTGSIKDGPVH 109 >SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06) Length = 434 Score = 28.3 bits (60), Expect = 7.3 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -2 Query: 96 DQGDHSGPGEAGPGPLHRGPGFAG 25 D+GD PGE G P P FAG Sbjct: 205 DKGDRGKPGETGSAPPRMKPIFAG 228 >SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) Length = 3489 Score = 28.3 bits (60), Expect = 7.3 Identities = 24/93 (25%), Positives = 43/93 (46%) Frame = -3 Query: 392 DKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRE 213 +KEVE NE + + KALE A G+K E+ + + ++ +E LQ + R Sbjct: 2190 EKEVEMLSRV-NELQEELAKALESAEAGKKAEKQLKEQESEHVELSREKEALQKQLYDRL 2248 Query: 212 RLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVD 114 + + E R + E S ++ A K +++ Sbjct: 2249 TEISSLKEELSRNKHS-ETSKLDEAEAAKALLE 2280 >SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) Length = 311 Score = 28.3 bits (60), Expect = 7.3 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = -2 Query: 249 ERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPG 70 ER + RL+ A + R G A E E+GA + + + E +QG +G Sbjct: 2 ERLNKEKERLKTRAIGQGKRVNEKEGKGATEQEKGAIKQGKGATEQEKEATEQG--NGAS 59 Query: 69 EAGPGPLHRGPGFAGQEVNG 10 + G G +G G AG++ G Sbjct: 60 KQGTGASEQGKG-AGEQEKG 78 >SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) Length = 769 Score = 28.3 bits (60), Expect = 7.3 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 288 RAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 169 R+ G PGQ+GE P+ GR G ++ + SG+ Sbjct: 429 RSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGV 468 >SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07) Length = 750 Score = 28.3 bits (60), Expect = 7.3 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -3 Query: 323 DAIEGEKTEQWRAQGQELLIQAKKENVL 240 D + + +QW EL ++ KKENVL Sbjct: 238 DVVLADLDQQWMLDSAELCLEEKKENVL 265 >SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 502 Score = 28.3 bits (60), Expect = 7.3 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +3 Query: 18 LPGQRSQVRDAAVQGLLLLVRSDRLGHVAHYPVDHVLLGETALHVRLLELVV 173 + G S ++A + + + V L HV H P D V +G+ L + L L+V Sbjct: 130 IDGDTSGRQEAGLADVAIEVLHRLLSHVIHGPHDQVGVGDDQLSILFLLLIV 181 >SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1670 Score = 28.3 bits (60), Expect = 7.3 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 288 RAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 169 R+ G PGQ+GE P+ GR G ++ + SG+ Sbjct: 1096 RSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGV 1135 >SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1705 Score = 27.9 bits (59), Expect = 9.7 Identities = 33/107 (30%), Positives = 39/107 (36%) Frame = -2 Query: 339 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAR 160 R TG R R E GA G P G GER G+ +GE G+P Sbjct: 231 RGETGPRGRPGEPGA---DGVRGPD-GSTGERGETGLDGAPGKKGEDGTKGE--QGVPGA 284 Query: 159 EVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQE 19 + + G R E E GD G GP PGF+G E Sbjct: 285 KGQPGL-DREEVV-MPPGESGAAGDLGPDGPPGPKGAPGAPGFSGIE 329 >SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 171 Score = 27.9 bits (59), Expect = 9.7 Identities = 12/83 (14%), Positives = 40/83 (48%) Frame = -3 Query: 374 TENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAY 195 ++ EW + + + +EG+ +W+ + E + +++ + Q + ++ R Sbjct: 74 SDREWKNRKTENGRTERQRMEGQSDREWKNRKTETR-RTERQRMEEQKDREWKNRKTENG 132 Query: 194 SEVKRRLDYQLEKSNVERRLAQK 126 V++R++ Q ++ +R++ + Sbjct: 133 RTVRQRMEEQKDREWKDRKIENR 155 >SB_26644| Best HMM Match : Collagen (HMM E-Value=0) Length = 877 Score = 27.9 bits (59), Expect = 9.7 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Frame = -2 Query: 195 LRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGP-GPLHRGPGFAGQE 19 LR G P R G P G + EQ +G PG GP GP + PG G + Sbjct: 110 LRHIGRLGPPGRRGPPGQNGAPGLDGE-NGEQGQKGSSGDPGSEGPVGPPGK-PGMDGAK 167 Query: 18 VN 13 V+ Sbjct: 168 VS 169 >SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 835 Score = 27.9 bits (59), Expect = 9.7 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +3 Query: 525 TKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKGFLVVCCY 662 TK + H+ R + PFF ++ K + W T A+ G++V Y Sbjct: 149 TKEINNMHSELR--KSIPFFSSRYKGHGIWDTLMAANLGYMVAFMY 192 >SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1308 Score = 27.9 bits (59), Expect = 9.7 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 1/105 (0%) Frame = -2 Query: 339 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAR 160 R G N GA + G + ++G R + G R A S P+ Sbjct: 646 RNQPGSGNSSPRSGASSPLGRASSPNSKKGSRVNSPIGA----------RRRANSPGPSI 695 Query: 159 EVERGAPSRPE-AHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFA 28 RG P AHGR S +G SGP A P H+ G A Sbjct: 696 NSPRGRAESPSNAHGRASSPSGTRGPVSGPSGARGSP-HQPRGRA 739 >SB_11762| Best HMM Match : 4HBT (HMM E-Value=1.6e-19) Length = 519 Score = 27.9 bits (59), Expect = 9.7 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = -3 Query: 338 VKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL--EAAYRERLMYAYSEVKRRL 174 V ++ED I GEK E R + AK V L ERL YA + +RR+ Sbjct: 91 VVSVEDLITGEKREVSRGFFTFVAFDAKHNKVQLSPIDPVTEEERLQYALASERRRM 147 >SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 754 Score = 27.9 bits (59), Expect = 9.7 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = -3 Query: 200 AYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIAD 39 A +VKRR D + ++ R + + +W T A P Q +++ +RCI + Sbjct: 423 ASKDVKRRSDQLVNLASSARHVG---ISEWFARKRTLAGLPPQSRRSFERCITN 473 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,536,118 Number of Sequences: 59808 Number of extensions: 529913 Number of successful extensions: 2105 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 1770 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2063 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2119930593 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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