Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f17r
(778 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 34 0.091
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 32 0.37
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu... 32 0.37
At4g01985.1 68417.m00265 expressed protein 30 1.5
At2g23270.1 68415.m02779 expressed protein ; similar to GP|24648... 30 1.5
At3g24120.2 68416.m03029 myb family transcription factor contain... 30 2.0
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 29 2.6
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 29 2.6
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 2.6
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 29 2.6
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 4.5
At3g22810.1 68416.m02875 expressed protein ; expression support... 28 6.0
At1g52080.1 68414.m05875 actin binding protein family contains P... 28 6.0
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 7.9
At1g76010.1 68414.m08825 expressed protein 28 7.9
At1g32730.1 68414.m04036 expressed protein 28 7.9
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 34.3 bits (75), Expect = 0.091
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -3
Query: 329 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLM--YAYSEVKRRLDYQLEK 156
L++ E EK Q A+ + L +AK+E +EAAY+ RL+ + E +++ + +L K
Sbjct: 671 LKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSK 730
Query: 155 SNVERRLAQKHMVDWIVSN 99
E L +K+ + ++ N
Sbjct: 731 ERHESDLKEKNRLSRMLGN 749
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -2
Query: 327 GGRNRGR--EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHV 202
GGR GR D G G P G G R PA RG ++G + V
Sbjct: 37 GGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAGRGGMKGGSKV 80
>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase-related protein XTR4
GI:1244754 from [Arabidopsis thaliana]
Length = 357
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 596 GFIPEEWFQ--FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 471
GFI +Q FF S + G YT G+ +A Y + +++V +H+
Sbjct: 73 GFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHD 116
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/107 (28%), Positives = 36/107 (33%)
Frame = -2
Query: 327 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVER 148
GG+ RGR+ G A G G G G G + G A+ G+ R
Sbjct: 104 GGKGRGRKGGGGAGGGVGGGVGAGGGAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGR 163
Query: 147 GAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVNGS 7
G S A G + G G AG G G G G GS
Sbjct: 164 GGKSGGGAGGGVGGGVGAGGGAGGSVGAGGGIGSGGGGTVGAGGRGS 210
>At2g23270.1 68415.m02779 expressed protein ; similar to
GP|2464853|gnl|PID|e353149|Z99707
Length = 86
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 153 ERGAPSRPEAHGRLD-SEQRDQGDHSGPGEAGPG 55
E G S E H +D +E + G HSGP +GPG
Sbjct: 52 ESGPSSGGEGHRFVDRTETLEYGKHSGPSTSGPG 85
>At3g24120.2 68416.m03029 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -3
Query: 353 GRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRL 174
G+ T + + + GE + + + + +++N Q+ A R ++ EV+RRL
Sbjct: 100 GKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQM-----EVQRRL 154
Query: 173 DYQLEKSNVERRL 135
QLE V+RRL
Sbjct: 155 HDQLEYGQVQRRL 167
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = -2
Query: 264 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD 85
PG +P+ R + E ++++R + GL APS E + + SE R+ G
Sbjct: 123 PGYGVSESPSPRISWENERRLKMVR-DHGYGL-------AAPSNIEMNHQYGSEFRNGGQ 174
Query: 84 HSGPGEAGPGPLHRGPGFAG 25
+G P P H P + G
Sbjct: 175 FNGVAPLPPPPPHHPPPYGG 194
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = -2
Query: 264 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD 85
PG +P+ R + E ++++R + GL APS E + + SE R+ G
Sbjct: 123 PGYGVSESPSPRISWENERRLKMVR-DHGYGL-------AAPSNIEMNHQYGSEFRNGGQ 174
Query: 84 HSGPGEAGPGPLHRGPGFAG 25
+G P P H P + G
Sbjct: 175 FNGVAPLPPPPPHHPPPYGG 194
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -2
Query: 177 SGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPG 34
SG+P + G P G L + G GP GP P GPG
Sbjct: 185 SGMPGGPLSNGPPPSGMHGGHLSNGPPPSGMPGGPLSNGPPPPMMGPG 232
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -2
Query: 339 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 208
R GG RG + G R G G+ +R P RGR G A
Sbjct: 4 RGGEGGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 28.7 bits (61), Expect = 4.5
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Frame = -3
Query: 386 EVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERL 207
EV+A ++ E + +K +EDA+ + R + +QA KEN L+L+ A +
Sbjct: 865 EVDALTSKLAETQT-ALKLVEDALSTAEDNISRLTEENRNVQAAKENAELELQKAVADA- 922
Query: 206 MYAYSEVKRRLDYQL-EKSNVERRLAQ-KHMVDWIVSNVTKA----ITPDQEKQALDR 51
S V LD L KS +E L Q + + I+S +A T + E++ L +
Sbjct: 923 ----SSVASELDEVLATKSTLEAALMQAERNISDIISEKEEAQGRTATAEMEQEMLQK 976
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 329 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRR 177
+ED G +W A+G +LL + +K ++ ++ + Y RL ++K R
Sbjct: 340 VEDNFLGHCNREWLARGGQLLKRTRKGDLHWKIVSVYINRLNQVILKMKSR 390
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = -3
Query: 329 LEDAIEGEKTEQWRAQGQELLIQA-KKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKS 153
+E + K ++ +A+ ++L + + VLL+L+ A + +K++L+ ++
Sbjct: 187 METKVFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQ-----VQVLKKKLNINTQQ- 240
Query: 152 NVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIADLASLARK*TEAN 3
+V + L+ K V + KA+ PD E + + + DL S + T+ N
Sbjct: 241 HVAQILSLKQRVARLQEEEIKAVLPDLEADKMMQRLRDLESEINELTDTN 290
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 7.9
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = -3
Query: 389 KEVEATENEWNEGRNQTVKALEDAIE--GEKTEQWRAQGQELLIQAKKENVLLQLEAAYR 216
++ E ++E ++ K LE+A E G++T Q + + +KE +Q+ Y
Sbjct: 1469 RKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEK-RIQILDKYV 1527
Query: 215 ERL---MYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCI 45
+L + +E ++ D +L K ER+ +K + D + + D+E L+R
Sbjct: 1528 HQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQ 1587
Query: 44 ADLASLARK 18
L L+ +
Sbjct: 1588 TALTHLSEE 1596
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 7.9
Identities = 37/118 (31%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Frame = -2
Query: 333 STGGRNRGREDG---AVARAGTGAPHPGQEGERAPAAR----GRLQGEAHVRLLRGEAAS 175
S GGR RGR G R G G + E E R GR +G R RG
Sbjct: 147 SPGGRGRGRGRGRGRGRGRGGRGNAYVNVEHEDGGWEREQSYGRGRGRGRGRSSRGRGRG 206
Query: 174 GLPAREVERGAPSRPEAHGRLDSEQR---DQGDHSGP--GEAG-PGPLHRGPGFAGQE 19
G E AP E R D+G + P G G GP RG G+ G +
Sbjct: 207 GYNGPPNEYDAPQDGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRG-GYDGPQ 263
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -3
Query: 410 KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL 231
KL + D+ +E ENE + V LE+A + G Q K+EN++ +L
Sbjct: 137 KLKEYRDRNIEV-ENEAFDRYMSNVNLLEEAFSFTSVPDEESHGTAAPEQNKEENIVSEL 195
Query: 230 EAAYRERLMYAYSEVKR 180
+ R S KR
Sbjct: 196 KLRLRSNSARTESFKKR 212
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,807
Number of Sequences: 28952
Number of extensions: 354753
Number of successful extensions: 1250
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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