Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f17f
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0197 - 15522167-15523524,15525416-15525683 30 1.3
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 29 2.3
01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819 29 3.0
06_01_0424 + 3041296-3041860,3042701-3042786,3042858-3043147,304... 29 4.0
05_07_0350 - 29457444-29457871,29458786-29461456 29 4.0
05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320... 29 4.0
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 29 4.0
02_03_0107 - 15303890-15304060,15304158-15304248,15304505-153046... 29 4.0
01_07_0260 - 42364769-42364777,42364884-42365354 29 4.0
07_03_0544 + 19309026-19310105 28 5.2
07_01_1113 - 10292781-10293299 28 5.2
05_05_0137 - 22641577-22642119 28 5.2
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413... 28 5.2
03_06_0309 - 33039006-33039184,33039753-33039912 28 5.2
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357... 28 5.2
11_04_0323 - 16380329-16380742 28 6.9
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 28 6.9
03_05_0292 + 22846273-22846377,22847161-22847823 28 6.9
03_01_0056 - 471338-471919,472013-472213 28 6.9
11_06_0099 + 20070925-20073867 27 9.2
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075... 27 9.2
08_01_1019 - 10290820-10291393,10293978-10294348 27 9.2
>09_04_0197 - 15522167-15523524,15525416-15525683
Length = 541
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 425 GWTRKLKRPRTNGTKVGTKP 484
G++++L RPR+NGT + TKP
Sbjct: 416 GFSQRLTRPRSNGTYLSTKP 435
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 409 PKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQ 588
P L + +D+E+ E + G + K DAI EK +EL I K+ VLL+
Sbjct: 37 PNLHSNVDREIRQIEQQAYTGVLRAFKVQSDAITWEKESLITELRKELQISDKEHRVLLK 96
>01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819
Length = 266
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 460 WNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERL 615
W G T A+ E E+T++W A E +Q + ++E +Y+ +L
Sbjct: 28 WRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQNAIKT--WEMELSYKAKL 77
>06_01_0424 +
3041296-3041860,3042701-3042786,3042858-3043147,
3043225-3043285,3043773-3043868,3044448-3044603,
3044811-3044987
Length = 476
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 433 KEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE-AAYRE 609
+E+E + NEG N+ K ++ EK + + E L A + N L+ E + RE
Sbjct: 337 REIECLHKQLNEGENKASKERSRRMKSEKLVKTLSSQVEQLRSANERNANLERELSECRE 396
Query: 610 R 612
R
Sbjct: 397 R 397
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/70 (35%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = -1
Query: 236 GIKPSLTLPGSPLTGRAKVFWSCVATSEAEPRATSAVHAVCLL--APERKATRDNIIYRI 63
G P T PGS GRA V W A A AV A ER+ R R
Sbjct: 637 GPAPGTTTPGSGGDGRAPVMWLAAALGLLACSVAFAAAAVATTRSAIERR-RRSGWQMRA 695
Query: 62 FYKLFPKCED 33
F K+ CED
Sbjct: 696 FQKVRFGCED 705
>05_07_0195 -
28331445-28331641,28331841-28331934,28332019-28332099,
28332186-28332234,28332334-28332419,28332513-28332740,
28332819-28332857,28332958-28333047,28333207-28333269,
28333371-28333449,28333539-28333585,28333668-28333730,
28333814-28333864,28333977-28334060,28334162-28334226,
28334559-28334676,28334775-28334825,28335228-28335314,
28335633-28335712,28336676-28336793
Length = 589
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 297 CGSGNIPVQQGNLCNGARILLRTVTAGH 380
CG + PV++GN CNGA + GH
Sbjct: 542 CGVVSSPVRRGNYCNGATKQQKLYQNGH 569
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 483 RESTGGRNRGREDGAVARAGTGAPHPGQEGE-RAPAARGRLQGEAHVR 623
R G RG +DGA AR G G +EG+ RGR + EA+ R
Sbjct: 16 RAERSGAPRGDDDGADARGGGGEEEEEEEGDGDGGDVRGR-RYEAYTR 62
>02_03_0107 -
15303890-15304060,15304158-15304248,15304505-15304614,
15304715-15304784,15306365-15306558
Length = 211
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 483 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAAR 593
R+ST GR+ G DG + A A H G+ AAR
Sbjct: 28 RQSTRGRSTGSGDGEESEALAAAVHAGKISREDAAAR 64
>01_07_0260 - 42364769-42364777,42364884-42365354
Length = 159
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 525 AVARAGTGAPHPGQEGERAPAA 590
A+A G GA G+EGE+ PAA
Sbjct: 132 AIAGCGAGAVDAGEEGEKRPAA 153
>07_03_0544 + 19309026-19310105
Length = 359
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 489 STGGRNRGREDGAVARAGTGAPHPGQEGERAP 584
+ G G GA A AG GAP P E R P
Sbjct: 21 AAGRSGGGGGGGAAAAAGAGAPDPRAEALRCP 52
>07_01_1113 - 10292781-10293299
Length = 172
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 148 SASDVATHDQKTFARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLA 309
S+ D AT + PG +RL + + + H + GP+ G+GL+
Sbjct: 91 SSVDAATKGNPPRSARTTSAPGSLRLPEVAQRVVELLHHRHWWFGPWALGLGLS 144
>05_05_0137 - 22641577-22642119
Length = 180
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +3
Query: 486 ESTGGRNRGRE-----DGAVARAGTGAPHPGQEGERAPAARGRL 602
E TGG++ GRE G + A H G+ RA RGR+
Sbjct: 7 EGTGGKHHGREVAMATRGRIPHAALAISHRGKSCVRARGRRGRI 50
>05_01_0495 -
4136871-4136906,4137043-4137171,4137545-4137694,
4137782-4137847,4138124-4138168,4139022-4139102,
4139202-4139283,4139571-4139642,4140473-4140573,
4140690-4140806,4140929-4141249
Length = 399
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 231 YS*RMVPILPLENWCDGS 284
Y+ RM PI+P+ENW GS
Sbjct: 213 YNPRMDPIIPVENWRKGS 230
>03_06_0309 - 33039006-33039184,33039753-33039912
Length = 112
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 454 SRSLQLPCPTKQPILVRISREPHTP*PAVTVRSNIR 347
+RS+ LP P +P + PH P AV R +R
Sbjct: 11 ARSMALPIPLARPPPLATVARPHPPQDAVQARDGVR 46
>02_03_0109 -
15333228-15334793,15335255-15335392,15335496-15335771,
15336357-15336422,15338140-15338487
Length = 797
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 100 SGASKQTACTALVARGSASDVATHDQKTFAR 192
+ A K AC ALV+RG A+D + + AR
Sbjct: 630 AAAGKLEACRALVSRGGAADAGSETALSVAR 660
>11_04_0323 - 16380329-16380742
Length = 137
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 477 PNRESTGGRNRGREDG---AVARAGTGAPHPGQEGERAPAARGRLQGEA 614
P+ +GG + GR G + R+G + G +G R R R GEA
Sbjct: 29 PSSPRSGGGSAGRAGGGGGSAGRSGGSSARLGDKGRRRQGGRWRRLGEA 77
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 480 NRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARG 596
N GGR GR DG+ R G G+R RG
Sbjct: 668 NSSGRGGRRGGRGDGSRGRGDRGRGRGFGRGDRGHGGRG 706
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +3
Query: 495 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 614
GGR G DG AR G G G G R GR GEA
Sbjct: 60 GGRGDGARDGGGARGGGGRGARGGGGAR--GGGGRHGGEA 97
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 253 FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 351
+F + V YT GV A YL + E+Y +H+
Sbjct: 47 YFGASIKVPSGYTAGVNTAFYLSNNELYPGQHD 79
>11_06_0099 + 20070925-20073867
Length = 980
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 313 YLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEWNE-GRNQT 483
YLC + ++ + L Y A + GP + WL +V+ N+ G N T
Sbjct: 445 YLCYNHLNIVMDPQWLPPFKLEKSYFASITMGPSFSRWLQSQVDIVALAMNDAGINDT 502
>09_04_0717 +
19706160-19706327,19707036-19707157,19707408-19707510,
19707644-19707734,19707960-19708132,19708534-19708622,
19708995-19709085,19709272-19709361,19709807-19709854,
19710033-19710104,19710181-19710274,19710350-19710494,
19710809-19710951,19711601-19711751,19712276-19712449,
19712799-19712874
Length = 609
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 214 KVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL 375
+ +L FIPE W Q + + Y +G L S ++ E SGL L
Sbjct: 337 ETQLKFIPEAWSQIIECRRVLKWTYAYGYYLHNKAKSDFFVYLQGEAESGLERL 390
>08_01_1019 - 10290820-10291393,10293978-10294348
Length = 314
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -3
Query: 321 AQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTP 199
A CC+ + +R F +LEP F + W TP
Sbjct: 44 AMACCRAWRDAAASRPALFAALDLEPAFASVGADAAEWWTP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,063,538
Number of Sequences: 37544
Number of extensions: 398849
Number of successful extensions: 1572
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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