Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f17f
(623 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b... 121 2e-27
BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+ transp... 121 2e-27
BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+ transp... 121 2e-27
AY871272-1|AAX11428.1| 256|Homo sapiens cell proliferation-indu... 121 2e-27
AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+ transp... 121 2e-27
AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+ transp... 121 2e-27
BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+ transp... 118 2e-26
AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+ transp... 83 8e-16
BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein. 33 0.62
AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250... 33 1.1
AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associ... 33 1.1
AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome assoc... 33 1.1
BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein. 32 1.4
BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48 rece... 32 1.4
AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein... 32 1.4
AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48 rece... 32 1.4
AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48 rece... 32 1.4
J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein. 30 5.8
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 7.6
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 7.6
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 7.6
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 7.6
AK128829-1|BAC87629.1| 385|Homo sapiens protein ( Homo sapiens ... 30 7.6
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 7.6
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 7.6
AB065557-1|BAC45258.1| 542|Homo sapiens seven transmembrane hel... 30 7.6
>X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b
protein.
Length = 256
Score = 121 bits (292), Expect = 2e-27
Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Frame = +1
Query: 76 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 237
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 238 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 414
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLVLYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 415 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 595 AAYRERL 615
YRERL
Sbjct: 180 VTYRERL 186
>BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 121 bits (291), Expect = 2e-27
Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Frame = +1
Query: 76 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 237
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 238 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 414
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 415 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 595 AAYRERL 615
YRERL
Sbjct: 180 VTYRERL 186
>BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 121 bits (291), Expect = 2e-27
Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Frame = +1
Query: 76 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 237
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 238 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 414
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 415 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 595 AAYRERL 615
YRERL
Sbjct: 180 VTYRERL 186
>AY871272-1|AAX11428.1| 256|Homo sapiens cell
proliferation-inducing protein 47 protein.
Length = 256
Score = 121 bits (291), Expect = 2e-27
Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Frame = +1
Query: 76 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 237
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 238 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 414
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 415 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 595 AAYRERL 615
YRERL
Sbjct: 180 VTYRERL 186
>AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 121 bits (291), Expect = 2e-27
Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Frame = +1
Query: 76 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 237
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 238 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 414
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 415 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 595 AAYRERL 615
YRERL
Sbjct: 180 VTYRERL 186
>AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit b
isoform 1 pr protein.
Length = 256
Score = 121 bits (291), Expect = 2e-27
Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Frame = +1
Query: 76 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 237
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 238 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 414
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 415 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 595 AAYRERL 615
YRERL
Sbjct: 180 VTYRERL 186
>BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 118 bits (284), Expect = 2e-26
Identities = 74/187 (39%), Positives = 104/187 (55%), Gaps = 7/187 (3%)
Frame = +1
Query: 76 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 237
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 238 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 414
EE+FQF + KTGVTGPY G GL Y SK IYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKGIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 415 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 595 AAYRERL 615
YRERL
Sbjct: 180 VTYRERL 186
>AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 195
Score = 83.0 bits (196), Expect = 8e-16
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Frame = +1
Query: 262 SKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPKLAAWLDKE 438
S GPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP +A + DK
Sbjct: 8 SAAATAGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPFVADFADKL 66
Query: 439 VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERL 615
E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE YRERL
Sbjct: 67 NEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERL 125
>BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein.
Length = 913
Score = 33.5 bits (73), Expect = 0.62
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 430 DKEVEATENEWNEGRNQTVKALEDAIEGEKTE-QWRAQGQELLIQAKKENVLLQLEAAYR 606
D ++EA N WN G + K +E EK + Q + I +K N + +L+ YR
Sbjct: 201 DSDIEARLNSWNLGLDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYR 260
Query: 607 ER 612
+
Sbjct: 261 SK 262
>AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250kDa
protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +1
Query: 424 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associated
protein 1 protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +1
Query: 424 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome associated
protein protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +1
Query: 424 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 594
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein.
Length = 626
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 205 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 384
E + G + EW HS T GP G +E E E L+L
Sbjct: 67 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 126
Query: 385 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 549
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 127 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 186
Query: 550 LLIQAK--KENVLLQLEAAYRERL 615
L +A+ +E+ L ++ A E L
Sbjct: 187 LAAEAEGDRESELSEVPEAGGEGL 210
>BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 205 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 384
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 385 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 549
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 550 LLIQAK--KENVLLQLEAAYRERL 615
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein
B48 receptor type 2 protein.
Length = 1076
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 205 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 384
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 385 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 549
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 550 LLIQAK--KENVLLQLEAAYRERL 615
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 205 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 384
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 385 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 549
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 550 LLIQAK--KENVLLQLEAAYRERL 615
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 205 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 384
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 385 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 549
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 550 LLIQAK--KENVLLQLEAAYRERL 615
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein.
Length = 456
Score = 30.3 bits (65), Expect = 5.8
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 477 PNRESTGG--RNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 614
P R+ G NRG E GAV GT P PG G P + +GEA
Sbjct: 15 PGRDGAAGVKGNRG-ETGAVGAPGTPGP-PGSPGPAGPTGKQGDRGEA 60
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 466 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 290
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 289 CKDPSHQ 269
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 466 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 290
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 289 CKDPSHQ 269
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 466 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 290
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 289 CKDPSHQ 269
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 466 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 290
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 289 CKDPSHQ 269
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AK128829-1|BAC87629.1| 385|Homo sapiens protein ( Homo sapiens
cDNA FLJ46309 fis, clone TESTI4039744. ).
Length = 385
Score = 29.9 bits (64), Expect = 7.6
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +3
Query: 429 GQGXXXXXXXXXXXXXPNRESTGGRNRGREDGAVARAGTGAPH--PGQEGERAP-AARGR 599
G+G P+ GGR R G GAPH G G+R P RGR
Sbjct: 94 GRGAPHLPGGAAGQRRPSPPRRGGRAEAPLTSQAGRPGRGAPHLPDGAAGQRLPQPPRGR 153
Query: 600 LQGE 611
G+
Sbjct: 154 AAGQ 157
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 466 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 290
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 289 CKDPSHQ 269
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 466 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 290
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 289 CKDPSHQ 269
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AB065557-1|BAC45258.1| 542|Homo sapiens seven transmembrane helix
receptor protein.
Length = 542
Score = 29.9 bits (64), Expect = 7.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 477 PNRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQ 605
P+ +TGGR GR+ G A G + GE ARGR Q
Sbjct: 33 PDEATTGGRAAGRQGGRAAGWQGGKAAGRRGGEARGGARGRGQ 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,188,655
Number of Sequences: 237096
Number of extensions: 2170117
Number of successful extensions: 13202
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13194
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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