Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f17f
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri...    32   0.27 
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu...    32   0.27 
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...    29   1.9  
At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    28   4.4  
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi...    27   7.7  
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ...    27   7.7  
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ...    27   7.7  

>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
           fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
          Length = 320

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 495 GGRNRGR--EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHV 620
           GGR  GR   D      G G P  G  G R PA RG ++G + V
Sbjct: 37  GGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAGRGGMKGGSKV 80


>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase-related protein XTR4
           GI:1244754 from [Arabidopsis thaliana]
          Length = 357

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 226 GFIPEEWFQ--FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 351
           GFI    +Q  FF S   + G YT G+ +A Y  + +++V +H+
Sbjct: 73  GFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHD 116


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +3

Query: 483 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 614
           R   GG  RG + G   R   G    G+  +R P  RGR  G A
Sbjct: 4   RGGEGGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47


>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 493 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLM 618
           L++  E EK  Q  A+  + L +AK+E     +EAAY+ RL+
Sbjct: 671 LKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLV 712


>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 974

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 487 KALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 585
           +A    IEG   E+   QG ELL++ KK N+++
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415


>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
           thaliana];  contains Pfam PF00046: Homeobox domain and
           Pfam PF01852: START domain
          Length = 682

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 279 RHTSFRVEELEPFFR 235
           RHTS++++ELE FF+
Sbjct: 63  RHTSYQIQELESFFK 77


>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 721

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 300 HTKSVRTRHTSFRVEELEPFFR 235
           H K    RHT  ++ E+E FFR
Sbjct: 67  HKKKKYNRHTQLQISEMEAFFR 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,905,289
Number of Sequences: 28952
Number of extensions: 297864
Number of successful extensions: 927
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)