Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f16r
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 270 9e-73
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 270 9e-73
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 270 9e-73
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 4e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 42 5e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 33 0.16
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 33 0.16
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 33 0.16
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.4
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 5.9
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 5.9
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 5.9
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 7.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 270 bits (661), Expect = 9e-73
Identities = 125/160 (78%), Positives = 139/160 (86%)
Frame = -2
Query: 728 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 549
P N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 248 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 307
Query: 548 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 369
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 308 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 367
Query: 368 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 368 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 270 bits (661), Expect = 9e-73
Identities = 125/160 (78%), Positives = 139/160 (86%)
Frame = -2
Query: 728 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 549
P N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 548 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 369
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
Query: 368 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 270 bits (661), Expect = 9e-73
Identities = 125/160 (78%), Positives = 139/160 (86%)
Frame = -2
Query: 728 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 549
P N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 548 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 369
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
Query: 368 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Frame = -2
Query: 674 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 495
+ V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFIIC-SPDSLAKTGRVFDAEVLVLEHRSIIASGYSC 450
Query: 494 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 315
VL +A + +D++TG+ K +K + I+ L +P +E F+E+P
Sbjct: 451 VLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYP 508
Query: 314 PLGRFAVRDMRQTVAVG-VIKAV 249
LGRF +RD +T+A+G V+K V
Sbjct: 509 YLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -2
Query: 554 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 375
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 374 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -2
Query: 554 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 375
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 374 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = -2
Query: 707 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 528
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 527 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 387
HP I Y +L + + ++V RTG +V K I+
Sbjct: 479 HPTTIKPNYQAMLHIGSVRQTATLVSMGKEV-LRTGDRDKVQFKFIR 524
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.5 bits (73), Expect = 0.16
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -2
Query: 719 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 540
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 354
Query: 539 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 363
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 355 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 404
Query: 362 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
L + + +E P RF +R +T+ GV V
Sbjct: 405 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.5 bits (73), Expect = 0.16
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -2
Query: 719 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 540
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 539 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 363
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 405
Query: 362 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
L + + +E P RF +R +T+ GV V
Sbjct: 406 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.5 bits (73), Expect = 0.16
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -2
Query: 719 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 540
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 539 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 363
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 405
Query: 362 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
L + + +E P RF +R +T+ GV V
Sbjct: 406 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 133 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 288
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 187 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 339
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 108 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 1
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -2
Query: 707 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 528
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 527 H 525
H
Sbjct: 509 H 509
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 491 LDCHTAHIACKFAEIKEKVDRRTGKSTE 408
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 491 LDCHTAHIACKFAEIKEKVDRRTGKSTE 408
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 491 LDCHTAHIACKFAEIKEKVDRRTGKSTE 408
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 541 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 672
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,253
Number of Sequences: 27780
Number of extensions: 361193
Number of successful extensions: 1051
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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