Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f16r
(729 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 257 5e-69
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 257 5e-69
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 257 5e-69
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 257 5e-69
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 141 5e-34
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 81 7e-16
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 63 2e-10
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 44 1e-04
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 39 0.003
At4g27900.2 68417.m04005 expressed protein 32 0.45
At4g27900.1 68417.m04004 expressed protein 32 0.45
At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /... 29 3.2
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 5.5
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 28 7.3
At5g07670.1 68418.m00878 F-box family protein similar to unknown... 27 9.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 257 bits (630), Expect = 5e-69
Identities = 114/161 (70%), Positives = 141/161 (87%)
Frame = -2
Query: 728 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 549
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 548 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 369
+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGM 389
Query: 368 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 246
V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 390 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 257 bits (630), Expect = 5e-69
Identities = 114/161 (70%), Positives = 141/161 (87%)
Frame = -2
Query: 728 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 549
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 548 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 369
+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGM 389
Query: 368 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 246
V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 390 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 257 bits (630), Expect = 5e-69
Identities = 114/161 (70%), Positives = 141/161 (87%)
Frame = -2
Query: 728 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 549
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 548 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 369
+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGM 389
Query: 368 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 246
V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 390 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 257 bits (630), Expect = 5e-69
Identities = 114/161 (70%), Positives = 141/161 (87%)
Frame = -2
Query: 728 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 549
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 548 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 369
+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGM 389
Query: 368 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 246
V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 390 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 141 bits (341), Expect = 5e-34
Identities = 61/95 (64%), Positives = 77/95 (81%)
Frame = -2
Query: 533 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 354
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 353 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 61 TKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 81.0 bits (191), Expect = 7e-16
Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Frame = -2
Query: 728 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 549
P +V ++ + ++ A PG+N+ + + +++ G+V S NP +F
Sbjct: 365 PNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVLS-SIVNPVPAVTEFV 423
Query: 548 AQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 375
AQ+ +L + GY +L H C+ E+K ++D +T K + +K+G A
Sbjct: 424 AQLQILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAA 483
Query: 374 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 258
+ + + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 484 VVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 62.9 bits (146), Expect = 2e-10
Identities = 41/160 (25%), Positives = 74/160 (46%)
Frame = -2
Query: 728 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 549
P+ ++S+E +A A GDNV ++ + ++ G V + P A
Sbjct: 505 PSGDQGTIRSLERDSQACTIARAGDNVALALQGIDANQVMAGDVLCHP-DFPVSVATHLE 563
Query: 548 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 369
V+VL I G H A A ++ +D +TG+ T+ +P+ + + +A+
Sbjct: 564 LMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAM 623
Query: 368 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
+ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 624 LEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 44.0 bits (99), Expect = 1e-04
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 3/156 (1%)
Frame = -2
Query: 707 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 528
V VEM + L EA+ GDNVG ++ + +++RG V + P + V+
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIIYVLKKE 392
Query: 527 HPGQIS---NGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV 357
G+ S GY P T + K +I D + K + GD + +
Sbjct: 393 EGGRHSPFFAGYRPQFYMRTTDVTGKVTKIMNDKDEES--------KMVMPGDRVKIVVE 444
Query: 356 PSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
P+ E RFA+R+ +TV GVI +
Sbjct: 445 LIVPVACEQGM------RFAIREGGKTVGAGVIGTI 474
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 39.1 bits (87), Expect = 0.003
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Frame = -2
Query: 719 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 540
+ + V VEM + L GDNVG ++ + ++++RG V +K K F A++
Sbjct: 312 LKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEI 369
Query: 539 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGD--AAIV 366
VL +T + + A+I KV+ N K + GD A+
Sbjct: 370 YVLTK--DEGGRHTAFFSNYRPQFYLRTADITGKVE------LPENVKMVMPGDNVTAVF 421
Query: 365 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 249
L+ PL E+ Q RFA+R+ +TV GV+ V
Sbjct: 422 ELIMPVPL--ETGQ------RFALREGGRTVGAGVVSKV 452
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 401 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 309
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 401 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 309
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Salix gilgiana] GI:6714524; contains
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 414
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 399 WVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWV 578
W + +S++VN +F+ VGS+ C V +LT VK + K S W+
Sbjct: 58 WDKACKSSSSSVNLIIPRGEFS--VGSLRFSGPCTNVSNLTVRVKASTDLSKYRSGGGWI 115
Query: 579 VFGVTSNITTT 611
FG + +T T
Sbjct: 116 QFGWINGLTLT 126
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 461 KFAEIKEKVDRRTGKSTEVNPKSI 390
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 94 VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPT 270
+C L + + +K R C+ A N + F+ F A L+TLPPP+ P+
Sbjct: 453 LCQWLVLSDMYGVLKIREYCLDLVACNFEA-FVETHEFRAMLLTLPPPSGDSSLRTTVPS 511
Query: 271 ATVCLMS 291
A +M+
Sbjct: 512 APGAMMT 518
>At5g07670.1 68418.m00878 F-box family protein similar to unknown
protein (pir||C71419) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 476
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +3
Query: 552 KICSTLRWVVF----GVTSNITTTQFLDGHV--LYVETYIVSRYSFLESFVVHLHRLD 707
K+C R +VF G+ ++I + G V LY+E + S LES ++H H L+
Sbjct: 360 KMCEAAREIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSGLESVILHWHELE 417
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,304
Number of Sequences: 28952
Number of extensions: 333682
Number of successful extensions: 968
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -