Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f15r
(591 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 157 4e-51
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 33 0.23
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 31 0.93
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11) 29 3.8
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 28 5.0
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 5.0
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 5.0
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 28 6.6
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 8.7
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 8.7
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 157 bits (380), Expect(2) = 4e-51
Identities = 76/114 (66%), Positives = 94/114 (82%)
Frame = -1
Query: 561 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 382
S KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP
Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67
Query: 381 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 220
+P+++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 68 VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 62.5 bits (145), Expect(2) = 4e-51
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = -1
Query: 108 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 7
HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 32.7 bits (71), Expect = 0.23
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Frame = -1
Query: 582 SRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIE---LH 412
+R + S K D ++ + + + + K L+E+ I ++K+ E +
Sbjct: 226 TRSTIARSPKHDDEKDNSGDDIDSDKEDSSGDAPHHEEKKEDLKEVVIKQSKQDEATAIK 285
Query: 411 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-----GKHVVFVGDRKILPKPSHKTRV 247
+ KS PKLKA Q + + KK K V+ LP+ +H+
Sbjct: 286 DSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKPVKRAKKVLNKKKMDTLPRGAHRPAS 345
Query: 246 ANKQKRPRS 220
AN Q+RP++
Sbjct: 346 ANAQRRPQN 354
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 30.7 bits (66), Expect = 0.93
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Frame = -1
Query: 570 VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 409
V+MS ++ +++SG +S E+ + E N+ LK +L E L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726
Query: 408 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 235
K + +YV M KL++ Q ELEK+ ++ ++I P K S T VA +
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 23 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIALY 202
T+R ++ ++DW ++ C CW +S T+ S LT +++P + + K A Y
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS---QVLTNIKVPIPAYSREKGYYTAHY 176
>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
Length = 237
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 238 FVSNTSFVAGLRQDLTVSNKDYMFTTE 318
F+ N SFV+ + DLT S+ D+ + TE
Sbjct: 40 FIPNLSFVSAVLWDLTKSSSDFQWHTE 66
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 28.3 bits (60), Expect = 5.0
Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 3/152 (1%)
Frame = -1
Query: 582 SRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKK 403
S +V S +++KA + D + + L + + ++ + QL + + + E K
Sbjct: 265 SSQVRSRSGRVVKAKKLDYDDVISPKFEPLKKEDNSNKISTQLLSVK-RELESGETPPSK 323
Query: 402 SIIIYVPMPKLKAFQKIQIRLVRELEKKFSG---KHVVFVGDRKILPKPSHKTRVANKQK 232
+ +P P K + V E +K KH + K P+ V +
Sbjct: 324 IQRLELPEPDKSINSKDSLNHVEEKPRKVHKVRLKHATVPVEGKEAPQ----NNVMKSRP 379
Query: 231 RPRSRTLTSVYNAILEDLVFPAEIVGKRIRVK 136
+ R + ++++ E +FP E +GK+ + K
Sbjct: 380 KVRIKNCVVAHSSVFEKALFPEESLGKKYKKK 411
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 525 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 358
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 473 PTSKPNFGSFTLQKLKKLNYTIRS 402
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 268 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 408
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216
>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
Length = 417
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = -2
Query: 494 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 396
WS+ KPTP KPN FG T Q L+K N+ + RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166
>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1732
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = -1
Query: 585 PSRKVVKMSTKII--KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 412
P + +K ++ + S + + ++ + + L + DL +Q RE KA++ + +
Sbjct: 932 PDKNTIKEGSRSVPFNLSALQEEEEDSDSANSFRALPSAVDLVSQGRE-GDGKAEDEDTN 990
Query: 411 NKKSIIIYVPMPKLKAFQKIQIRLVRELE 325
NK+ Y M KL + I +V ELE
Sbjct: 991 NKEQTYDYTFMKKLPTGAEASIAMVGELE 1019
>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 83 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 190
V+CW L + + + EP N L +L ++ GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = -1
Query: 387 VPMPKLKAFQKIQIRLVRELEKKFSG 310
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Frame = -1
Query: 534 AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 370
A+ + + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296
Query: 369 KAFQKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 256
+ + + +RE+E++F K+ + +R++ + K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,463,862
Number of Sequences: 59808
Number of extensions: 347022
Number of successful extensions: 1047
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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