Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f13r
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    27   2.1  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    27   2.1  
SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.7  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   4.8  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   6.3  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   6.3  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   6.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.3  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   8.3  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 225 IRRGSHHHRAEEGTRRRQGRAKGAHRTDRSRSQGDQGPER 106
           I R S H R+  G +R Q R K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 225 IRRGSHHHRAEEGTRRRQGRAKGAHRTDRSRSQGDQGPER 106
           I R S H R+  G +R Q R K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 124

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 5   KIQTESVLHRQYFGTN*NAPLQNHPTYFRH 94
           ++ T S+L + Y+G +   P +N+PT +R+
Sbjct: 27  EVPTTSLLSKDYYGHSIEEPDENNPTRWRY 56


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 82  LFSASWVPSLWSLISLR 132
           L+S+SW+P+L  L+S R
Sbjct: 285 LYSSSWIPTLHDLVSTR 301


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 515 ACPVLSEDYFRPWRQLAAAS 456
           +CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 260 GAAPETVESRLSSDGVLTITAPRKVPD 180
           G  P T+ES ++ D  L I   RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 649 YNQICLFYHSCWVTGPAFVTTTGPVVLLIKILD 551
           Y  I   YHS WVT  A+   + P V+L  +L+
Sbjct: 491 YFLIMFVYHSSWVTSNAY---SSPTVVLSTVLN 520


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 509 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 402
           P  SED   P + L  A  ++   +K+D ++F+V++
Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 139 PVCAMGTFRSPLTASGTFLGAVMVRTP-SDDSRDSTVSGAAP 261
           P  +   F +P+T SGTF  +     P S   R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,010
Number of Sequences: 5004
Number of extensions: 63077
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)